immGLIPH-package	immGLIPH-package
.check_existing_files	dot-check_existing_files
.cluster_gliph1	dot-cluster_gliph1
.cluster_gliph2	dot-cluster_gliph2
.coerce_numeric_cols	dot-coerce_numeric_cols
.extract_input	dot-extract_input
.get_blosum_vec	dot-get_blosum_vec
.get_reference_list	dot-get_reference_list
.global_cutoff	dot-global_cutoff
.global_cutoff_immapex	dot-global_cutoff_immapex
.global_cutoff_stringdist	dot-global_cutoff_stringdist
.global_fisher	dot-global_fisher
.load_reference	dot-load_reference
.local_fisher	dot-local_fisher
.local_rrs	dot-local_rrs
.parse_sequences	dot-parse_sequences
.prepare_motif_region	dot-prepare_motif_region
.prepare_result_folder	dot-prepare_result_folder
.save_parameters	dot-save_parameters
.setup_parallel	dot-setup_parallel
.standardize_colnames	dot-standardize_colnames
.validate_params	dot-validate_params
.valid_reference_names	dot-valid_reference_names
clusterScoring	clusterScoring
deNovoTCRs	deNovoTCRs
findMotifs	findMotifs
getGLIPHreference	getGLIPHreference
getRandomSubsample	getRandomSubsample
gliph_input_data	gliph_input_data
gliph_sce	gliph_sce
gTRB	gTRB
immGLIPH	immGLIPH-package
loadGLIPH	loadGLIPH
plotNetwork	plotNetwork
reference_list	reference_list
ref_cluster_sizes	ref_cluster_sizes
runGLIPH	runGLIPH
