Package: annoLinker
Type: Package
Title: Annotating genomic regions through chromatin interaction links
Version: 1.1.0
Authors@R: 
    c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given='Kenneth', family='Poss', email='kposs@morgridge.org',
        role=c('aut', 'fnd')))
Description: Fast annotation of genomic peaks using DNA interaction data by
    constructing interaction networks with igraph, where peaks overlapping any
    node in a connected subgraph are annotated with all genes in that subgraph.
    The annotation evidence could be visualized as either a network graph or a
    genomic track integrated with gene annotation information.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
biocViews: Network, Annotation, Visualization
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, BiocGenerics, future.apply, GenomicRanges,
        GenomeInfoDb, igraph, IRanges, InteractionSet, methods,
        progressr, S4Vectors, Seqinfo, trackViewer, visNetwork
Suggests: BiocStyle, knitr, rtracklayer, rmarkdown, testthat,
        TxDb.Drerio.UCSC.danRer10.refGene, org.Dr.eg.db, future
URL: https://github.com/jianhong/annoLinker
BugReports: https://github.com/jianhong/annoLinker/issues
git_url: https://git.bioconductor.org/packages/annoLinker
git_branch: devel
git_last_commit: 3cef056
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.24
Date/Publication: 2026-05-18
NeedsCompilation: no
Packaged: 2026-05-18 21:12:30 UTC; biocbuild
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>
Built: R 4.6.0; ; 2026-05-19 04:41:58 UTC; unix
