Package: RankMap
Title: Rank-based reference mapping for fast and robust cell type
        annotation in spatial and single-cell transcriptomics
Version: 1.1.1
Authors@R: 
    person(given = "Jinming", 
           family = "Cheng", 
           email="jinming.cheng@outlook.com", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-3806-4694"))
Description: RankMap is a fast and scalable tool for reference-based 
    cell type annotation of single-cell and spatial transcriptomics data. 
    It uses ranked gene expression and multinomial regression to achieve 
    robust predictions, even with partial gene coverage. 
    Compatible with Seurat, SingleCellExperiment, and SpatialExperiment 
    objects, RankMap offers flexible preprocessing and significantly 
    faster runtime than tools like SingleR, Azimuth, and RCTD.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports: dplyr, glmnet, graphics, magrittr, Matrix, matrixStats, rlang,
        Seurat, stats, SummarizedExperiment
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Annotation, Regression, Preprocessing, Software
URL: https://github.com/jinming-cheng/RankMap
BugReports: https://github.com/jinming-cheng/RankMap/issues
Depends: R (>= 4.6.0)
Suggests: BiocStyle, knitr, rmarkdown, SingleCellExperiment, testthat
        (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/RankMap
git_branch: devel
git_last_commit: 3795f06
git_last_commit_date: 2026-05-11
Repository: Bioconductor 3.24
Date/Publication: 2026-05-18
NeedsCompilation: no
Packaged: 2026-05-18 23:07:47 UTC; biocbuild
Author: Jinming Cheng [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3806-4694>)
Maintainer: Jinming Cheng <jinming.cheng@outlook.com>
Built: R 4.6.0; ; 2026-05-19 05:04:42 UTC; unix
