b20a9fbd487ebcf097c9d4717fdca5d54e63bb666f6b2085ce9b63b6ba3cc6b6 3389 DESCRIPTION
a29c1ed10b61b247065b3550ffcfe0314c93e5d519ea5d0c377e11fe0abf7362 2864 INDEX
b721b15e235d699bfa13e26dbf3919f6e02de719408091deb7789eef69c4a51a 4348 Meta/Rd.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
bb7d1595d66b0c567a1db7c5f35e995eca0466f77cd66c1bdff02b96e76c7773 3832 Meta/hsearch.rds
59e1f73d684c6fca91eb8b6e69ad15a795a630a80bf5ed092b98f34a304cd094 1943 Meta/links.rds
958f0b34e62fa5d79390da9e0866f72e262ba89afa47537c0efba9f5f09d38a5 744 Meta/nsInfo.rds
7baa9162785f104f430e9095e02a47120d6ac011d1c33ff387f0d6526f9ebe0a 1814 Meta/package.rds
d11f8aa734de3e4e47a2f6f11cbbead27dd57625186d9746b5a12dc270698945 228 Meta/vignette.rds
ddf6e27e9db21a30fa093a5ff360c7e4575946fbe058d0f1cbed4508c5601f65 1489 NAMESPACE
e29fbfd4360b255f8cffdfee97a04ce14bbb0d3b594f3ee50770c79f34768094 3887 NEWS.md
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/MSstatsConvert
7a3b7c4d1cc09895bab106ac7da326befef2f1ccc39769a45f6ef446a31963a2 276011 R/MSstatsConvert.rdb
6c10c90490340fc4249aaca0f09e20a0b40840b5d06b7565fb3cccd1d3cbf1bf 2923 R/MSstatsConvert.rdx
ff9901ac371208d8ada3a57a8f7a0899cd3d572e8db0f1e9a829feaa109d7d81 1666 README.md
5fca474adfedf1e9f46cb263c899bd19363a7adc7e3f7fe15c1c7dd9a53263f4 1450 doc/index.html
fed255b71fd61036594c5fc68b3af1a3cc000da6210632a68fc4f7b51ab37ece 5204 doc/msstats_data_format.R
4c567c9b70b45e508abc70652dc965f812f041e3f369d5e32ecf8eaccfa8e45b 19036 doc/msstats_data_format.Rmd
e04f01101a53f3dbbffe2330a14e2476fc48e4e872574e5a4cc6c7a4ac470e65 66912 doc/msstats_data_format.html
f72e72026a5a16ac34ef9a985ea08dca5121c4544a8dec1a16f233dc3254150b 6018 help/AnIndex
5c20143c9521f1b26035a3209d8c717ad26f7f58c3e38b381b2a87a5057aaf5e 222950 help/MSstatsConvert.rdb
5ceb2e37809b705f1688951153385514cc31b4d6f2528127fa01f073cf3f495e 2553 help/MSstatsConvert.rdx
a206d22c197c24c19893c8b8b797adc774216e427506077c59184548b4334a63 1611 help/aliases.rds
77117b94e290256647726ea3a743ec50763083c8a4557026192379a6e1b98335 1285 help/paths.rds
f31bb084808c5f4e2e8564e1fb8209aa67bd28b4d67f1d5bd606d9a6c43eb4bb 6414 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
69fbbdf5f5b69bfc32bdd49590a322be0f921bbd53d743cb91953d016dc06408 130352 libs/MSstatsConvert.so
50bad638e16e168eb9129f4806dc7481f60b42cc746a7cf7a573e7b9b8a70bf5 6168 libs/symbols.rds
fc06820a26b5eba232b6c7f758263984e2ba70b1c7d01706595ed21b1689d074 45 tinytest/get_dt_test.csv
402d165172c52cfae663328bb6b20fd41f44adda884f79cae6c9b8ef7e2fbedb 11946 tinytest/processed_data/DIANN/MSstatsDIANNFilesObject.rds
31a833a61216ac81712991bfcdffec428d1486a82472245800417716ee5d74c6 4947 tinytest/processed_data/Metamorpheus/MSstatsMetamorpheusFilesObject.rds
af3e8a48b1971e90c4b6fc7be05ec61c331d2bf34e52b4353c13e8062f1d73b6 411932 tinytest/processed_data/PD/MSstatsProteomeDiscovererFilesObjectTMT.rds
8fee4df9af4eeadcf3e4c501d57e417e6d934aac88200ce044ab8046b5a5d6e0 411939 tinytest/processed_data/PD/MSstatsProteomeDiscovererFilesObjectTMT3-1Format.rds
243d6605ae70816fbc80dde581ea655bbbb68d8ed19b11a0d52350aeb3cd16c1 402429 tinytest/processed_data/PD/MSstatsProteomeDiscovererFilesObjectTMTBadInput.rds
82ea8f36dbecbc7a61b0d1b6548dc47834562d21b9b5ce47e2220b7e9073323f 12121 tinytest/processed_data/ProtProspector/MSstatsProtProspectorFilesObjectTMT.rds
5c5a72c556d3e36f06549d3c794fae67f35434078e61cec4f524348b2efa90a1 126347 tinytest/raw_data/DIANN/PXD055942.parquet
54b22f4348290b9a1627fe45e3a8d710f6b484e80d951e2cf644d0efabc3c04c 125 tinytest/raw_data/DIANN/annotation.csv
b160d275d758beea808aa0ab72534b09c21604af059dad8a58dd581d6fdc9a36 2081 tinytest/raw_data/DIANN/annotation_PXD055942.csv
6ac86cc023d9ff08b94847d710fcfd39b658cafe36efd0a51599b3285b5678bf 155 tinytest/raw_data/DIANN/annotation_diann_2.0.csv
35cc43847e23caec0291ba5e554eef77cffe508d7c37063e33e67cffcc6f15bd 249 tinytest/raw_data/DIANN/annotation_silac.csv
b9f3dde28a6c54777f6fa1a6e2621c0ab2aa9d1b1b5ba68874ef966cb80e12af 51014 tinytest/raw_data/DIANN/diann_2.0.parquet
c6236239b9d3cd10b2c05b1c318415ba3559be8e03ba6d4d82b2469012509d20 28754 tinytest/raw_data/DIANN/diann_input.tsv
9193f9a9df2690e84063d2c8decdff78a9acc67e367153d9deb6c61881a6f84b 57716 tinytest/raw_data/DIANN/diann_input_silac.csv
0bed674745c7e68184890cc11dfcf42424e664313cda2b07681f93c6debe4c7e 171 tinytest/raw_data/DIAUmpire/annot_diau.csv
7fb14c61ca5fc18285424bdc81350de6e79aa3a583aaecc9f24d89e17deb84d2 404133 tinytest/raw_data/DIAUmpire/dia_frag.csv
ac1d0b34fdd483de49e23430f42551e6afedfc05c67748c58ada936488146edf 19568 tinytest/raw_data/DIAUmpire/dia_pept.csv
ec549f89dfdf39e8630da24d9b52f141612ab760d59db0d91560d384be03dcf6 1975 tinytest/raw_data/DIAUmpire/dia_prot.csv
afa4f890e8e7ed181428ba43fc9927ea85fcc353e7c79db426f7bb9a9d03d14e 26538 tinytest/raw_data/FragPipe/fragpipe_input.csv
55e10d6c0921ba10ba4e6bc197512e8d24a59b9832fa42f356f343633e59a84c 123 tinytest/raw_data/MZMine/annotation.csv
e4a8d9eb862ce1257043ec66f962f2754134f7a71cf900dac699f21d70ddf44f 150 tinytest/raw_data/MZMine/mzmine_annotations.csv
280b109368f7dce97de475294c937f50112e8b0c25e4e48cd5d2059f64b979e5 322 tinytest/raw_data/MZMine/mzmine_input.csv
e659caaf98d4b45e92094e2c7fe628888f0f5b82ceedbe9c77299c0114693433 870 tinytest/raw_data/MaxQuant/annotation.csv
2eabbec99ad1c8b290ab26b448779593a4bb5128cb7461ca09c313af097d768d 796801 tinytest/raw_data/MaxQuant/mq_ev.csv
00d852700cd3abb1705d6f6c908b78d59b6e35168d4e27f106ddde6e4fa59a8f 32904 tinytest/raw_data/MaxQuant/mq_pg.csv
3a4770a1caa45568a73ec1b87cb11b00b98a0b3309c06d81606d9e7bddb2a6f0 13161 tinytest/raw_data/MaxQuantTMT/mq_annotation.csv
dbf63bb8fd1fc372b262df226defe68cd55af8a7905d2b4fbfc60d1d234cba25 141879 tinytest/raw_data/MaxQuantTMT/mq_ev.csv
ea563791d9d2579a382482065c8e0a01fa6e9a4e649cdeda87cc3b004ad1ad97 33281 tinytest/raw_data/MaxQuantTMT/mq_pg.csv
955097bf831b474ed4f100a84e3120a38d056e930af365715d1f05921da67dbb 17666 tinytest/raw_data/Metamorpheus/QuantifiedPeaks.tsv
152345fba4ea6102028021e60a2dee4daab8fd2d0b833bd3e5086eb89dd39c42 351 tinytest/raw_data/Metamorpheus/annotation.csv
ca6345120d9e349a9b56e56a6657e3dc9eb898a71745b5a3696023f667392b90 20329 tinytest/raw_data/OpenMS/openms_input.csv
4585094b3c8b00b8036096aa6c2dc317430b76a2844824dad3d24e639322af24 147173 tinytest/raw_data/OpenMSTMT/openmstmt_input.csv
f1c674a46b9ea9067d423b4b4ca8fa8d23fb00248067b8d67a9ac768c537d616 375 tinytest/raw_data/OpenSWATH/annot_os.csv
c91c50376bdd13f522af4b30be4bb3261357fb7cff0b9c9661a85f01d1cd7b11 29861 tinytest/raw_data/OpenSWATH/openswath_input.csv
edf003d64a1a5d2fa12da069a962eb3f3ea89836c632fa53913598093c4667f9 942 tinytest/raw_data/PD/annot_pd.csv
e229e697e2f01e29f2930c965d6d54571a5ef60d32fd72547c01c6025637f55c 85495 tinytest/raw_data/PD/pd_input.csv
6e9b0c5e434955a9661f4fd485eb6ee63f94cfbb0384e92c018f3b55c5c7db21 12981 tinytest/raw_data/PDTMT/pd_annotation.csv
49d3d3fc29e576ff1f8528281f26f34f3daee54ad6ac14fdc28fb10ea809ab54 171012 tinytest/raw_data/PDTMT/pdtmt_input.csv
4c9c67c21159dc565a3caf1113d20b837ff21f8fa391ca6aa593f78284ebd937 4386 tinytest/raw_data/Philosopher/MSstatsTMT_annotation.csv
db979a991e5e120726471877f11b05a88cdf84cd9a67f06fb0f0fd9100ac9ad3 34446 tinytest/raw_data/Philosopher/msstats.csv
9e30e2d4e495e197828e68c281eea2131cb2884159cf7fd67b2371ddcbf6e927 447 tinytest/raw_data/Progenesis/progenesis_annot.csv
725aaa73dcfa81a3b412814ab49ba24459ffd1ad2d32fe88b21f5b78002968ce 39027 tinytest/raw_data/Progenesis/progenesis_input.csv
aa5a484b37f6fad142ade61b5164d464a66d72efb019c5a0867e8cfa76f4eb22 4011 tinytest/raw_data/ProteinProspector/Annotation.csv
f8124e237dcac1001397b668feb3171136e26ddc5288f53539d99f58c8ec3cbf 43409 tinytest/raw_data/ProteinProspector/Prospector_TotalTMT.txt
15b24d38f4f79410b651ccae1a40ae8495ba8ec1e3ebd735fccff1c35c0fc98e 264663 tinytest/raw_data/Skyline/skyline_input.csv
18c33b4db9210be0318f0e5256ffc978c47fd2cb13a6436ad03c3c81cc636e0d 6093 tinytest/raw_data/SpectroMine/spectromine_annotation.csv
dd361d128341604c515266dc6f7e4b35d8ed34a14cffdf10578d4ed25a8e1151 55697 tinytest/raw_data/SpectroMine/spectromine_input.csv
bc4e15a1434fe9d496e27cc2fdc4382d45e1b4a519d0fe3155939ed2d39fce6a 1940 tinytest/raw_data/Spectronaut/annotation.csv
ec6386bb266dc7e951def0ddaade3b8a0dff2a848138624ef902b06cdb0d943e 37959 tinytest/raw_data/Spectronaut/boxcar_protein_turnover_input.csv
c8f5c96a1fe229abfe7b23b2d4c0d64ca72529789e10ab881172b04a67a2bd67 409487 tinytest/raw_data/Spectronaut/spectronaut_input.csv
da3d8d3532e7c461708047c1d758e3370b09fee5022afe0b842a045cd9591661 1867333 tinytest/raw_data/Spectronaut/spectronaut_quality_input.csv
c8cb7600e6696d55f1fccc5283d8a8cd0b5c6b2c895cb968fb7501f82cc8dfcd 35803 tinytest/raw_data/unbalanced_data.csv
0088fcda43528bbad6874d9b1a6d38c1ca2a14638513f6d9ed5de5c352adf4cf 2196 tinytest/test_MSstatsConvert.R
2dc606d9a1f2a950ecb392c3f3618bd4108b99435613ace6deebb898ad512727 3524 tinytest/test_annotation.R
1c19c1d66bde1dcf971b8d16bbaee417efdbb994f63153036140b5d6cf45c1b9 6733 tinytest/test_balanced_design.R
9a41e9bc70d0f16b675fc098f366c6d56215928e38629a6bca54f26873cd35f5 12340 tinytest/test_cleanRaw.R
e6a9571c9f0a2e7efaf3d2896467006731c1df9fc1a956852033567f2f96da05 3385 tinytest/test_clean_DIANN.R
d35446c7f443550d22cb99c82650d497ed067c67e6e50487948ccdf2f419071e 580 tinytest/test_clean_Metamorpheus.R
607dfb1cceffca9fc28d71f50b4aab09e8fece541e4bb4805c5da4b283d91dcf 707 tinytest/test_clean_ProteinProspector.R
8bd0a23fc3d9dcb6192b6b736a56090a85002c283c404a01f76459f233754af3 1534 tinytest/test_clean_ProteomeDiscoverer.R
477362fd46f635c9aa54d4b9887eac08408d10adb1a7a7b24022ca2fd6655f70 3622 tinytest/test_clean_Spectronaut.R
e60f084bedb00e68f6cac26bd8dd1be443cfd8e4a8fe72995e1c06d7037c6a27 11683 tinytest/test_converters_DIANNtoMSstatsFormat.R
7ddfb5f3d364a9a35d2bd09cf45837a53d21ce5600754dc1d0cfb3ecb2862c1a 1553 tinytest/test_converters_DIAUmpiretoMSstatsFormat.R
64c93b124856fc51012da91f45de041c66c09194f3556905fb06a1e01187b460 910 tinytest/test_converters_FragPipetoMSstatsFormat.R
707d107e117513195f68a4281aa88ac8244a10e53a0a0257f2f15e3d1bd45a19 5489 tinytest/test_converters_MZMinetoMSstatsFormat.R
4ccfaba55fd52135ff0e69bd54501dfc797e94a91a7318c423b87d3e73167a68 1170 tinytest/test_converters_MaxQtoMSstatsFormat.R
20c6d637e15d984de1c279c3188f78c503be2a6577446e6085624482e75ab623 1849 tinytest/test_converters_MaxQtoMSstatsTMTFormat.R
7eb2887c0625def91b030e1095f51f0c3b9e892a214c26b09f263da7db66dc4c 1069 tinytest/test_converters_MetamorpheusToMSstatsFormat.R
8f5524d609e7653e67b8faf81693d0c0513604206404ca22e8d944e635e9413f 884 tinytest/test_converters_OpenMStoMSstatsFormat.R
7cafbe7aca6e94d18d52e9b4f0a6cc6a6de34743bb35509087a0026f1d1c9a12 1084 tinytest/test_converters_OpenMStoMSstatsTMTFormat.R
10ae0927584caea84bddb667d5769c4aa5432615773174f1b99f2112b8a486fa 1042 tinytest/test_converters_OpenSWATHtoMSstatsFormat.R
d88e5104f94b550e5ce2eaf00f79809a1d065f2bd130ffd4a8411994817dd7af 1007 tinytest/test_converters_PDtoMSstatsFormat.R
139dd1a143d9d96e3a4247d0e00389395426978ac1837726c5e7b155dada7dde 2081 tinytest/test_converters_PDtoMSstatsTMTFormat.R
67216995518bc89dec11536a6ccafabc36d1a34579ecedd2f23279450bf04b77 1367 tinytest/test_converters_PhilosophertoMSstatsTMTFormat.R
154294870dfaf6bf34aeefe6630b0bd9da05ce3f47b304dc970f7ab2870bd371 1145 tinytest/test_converters_ProgenesistoMSstatsFormat.R
2375a499f8316df2f218e1c1613f29f2b1fb179175695aa984eae9f1df5a0245 1641 tinytest/test_converters_ProteinProspectortoMSstatsTMTFormat.R
b297aae4246b28143f2f0d91bf209b897e4851a8427cc08afb19251b51b9f3f7 877 tinytest/test_converters_SkylinetoMSstatsFormat.R
cff6176b16674b44a94db2b223e05bb0d9ca7aa62364f2ba39c7cfdcf1157312 1588 tinytest/test_converters_SpectroMinetoMSstatsTMTFormat.R
79446936ce3c7d68803c389a017c57a4926a774457cb067611982608435aca6c 17255 tinytest/test_converters_SpectronauttoMSstatsFormat.R
44d43fceed2946a620bfc437737d5b77cc6e7f62007644b3a51bf24444cc058e 1615 tinytest/test_dt.R
b6550884542c2f49b7d60854bd31012a64ea537dac313f2c4d4e5c6fbf701ce1 12506 tinytest/test_filtering.R
0502f1aaeba9fa7dc142025cce763986d66fefe5682990a1e4a086e4de5e3227 7405 tinytest/test_fractions.R
6455d9f2a122d1ec35de78f87519c3f2a411f98ff0595a7bbec5ddf3f7406356 189 tinytest/test_logging.R
2a7c5e7d8030734c0893c08ff0e4daa3a8999331595d20b66f19aca04c8e465a 1018 tinytest/test_shared_peptides.R
ac18fb65606d88c55f4395d63104d9ac28a9ee3205a4a30d957fa73c5e24b9d6 15199 tinytest/test_utils_anomaly_score.R
b15822b6aa918d0c936bba0cfd0f295be547ce43b978c0bdcd7d804b79b8d088 9577 tinytest/test_utils_clean_features.R
a6e7ae36046115331dd23255f03196b4b6de04c39a4e7000ee7aeec0f4504fde 11472 tinytest/test_utils_data_health.R
02f276f4b94d7f09862465a664da83e425971a69bda09676e59591eceba0ecd9 1281 tinytest/test_workflow.R
