# Low Dimensions projection of cytometry samples

## Documentation for package ‘CytoMDS’ version 1.9.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

as.matrix-method | DistSum class
channelSummaryStats | Summary statistics per channel computation
colnames-method | DistSum class
colnames<--method | DistSum class
computeMetricMDS | metric MDS projection of sample
dim-method | DistSum class
dimnames-method | DistSum class
dimnames<--method | DistSum class
distByFeature | DistSum class
DistSum | DistSum class
DistSum-class | DistSum class
DistSum-method | DistSum class
eigenVals | MDS class
EMDDist | Calculate Earth Mover's distance between two samples
featureNames-method | DistSum class
featureNames<--method | DistSum class
ggplotDistFeatureImportance | Plot of feature relative importance in distance
ggplotMarginalDensities | Plot of channel intensity marginal densities
ggplotSampleMDS | Plot of Metric MDS object
ggplotSampleMDSShepard | Plot of Metric MDS object - Shepard diagram
ggplotSampleMDSWrapBiplots | SampleMDS biplot wrapping
ggplotVolcano | standard volcano plot
GoF | MDS class
MDS-class | MDS class
ncol-method | DistSum class
nDim | MDS class
nFeatures | DistSum class
nPoints | MDS class
nrow-method | DistSum class
pairwiseEMDDist | Pairwise Earth Mover's Distance calculation
pctvar | MDS class
projDist | MDS class
projections | MDS class
pwDist | MDS class
rownames-method | DistSum class
rownames<--method | DistSum class
RSq | MDS class
RSqVec | MDS class
show-method | DistSum class
show-method | MDS class
smacofRes | MDS class
spp | MDS class
stress | MDS class
[-method | DistSum class