Changes in version 0.1.0 (2021-11-15)
+ Package created.

Changes in version 0.10.0 (2023-12-29)
+ Prepare for Bioconductor release

Changes in version 0.99.0 (2024-01-31)
+ Bump up package version to satisfy the requirement of Bioconductor

Changes in version 0.99.1 (2024-02-02)
+ Standardization of datasets, including replacing clinical dataset with public dataset, add detailed description for data, panel list and regions used in CaMutQC
+ Add logo
+ Make `readBed` function more flexible, enabling the reading of .rds file

Changes in version 0.99.4 (2024-02-27)
+ Update CITATION file by adding doi and http information
+ Further remove some mutations from example VCF files to satisfy 5Mb limit

Changes in version 0.99.5 (2024-02-27)
+ Further remove some mutations from example VCF files to satisfy 5Mb limit

Changes in version 0.99.6 (2024-02-27)
+ Further remove some mutations from example VCF files to satisfy 5Mb limit

Changes in version 1.5.2 (2025-06-20)
+ Develop A Shiny APP
+ Update manual, filterreport and README
+ Fix some bugs

Changes in version 1.5.3 (2025-06-25)
+ Customized normalDP cutoff for dbsnp and non-dbsnp variants
+ Add a new cancer type: STAD
+ Update manual, workflow and filterreport

Changes in version 1.5.4 (2025-06-27)
+ Change PON_file to an optional parameter
+ Modify the description of parameters in mutFilterCan function

Changes in version 1.5.5 (2025-07-21)
+ Update citation

Changes in version 1.5.6 (2025-10-20)
+ Update citation in manual

