Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.53.0
Date: 2025-07-24
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katja.hebestreit@gmail.com>
Depends: R (>= 3.5.0), methods, S4Vectors, IRanges (>= 1.17.24),
        GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges, Seqinfo,
        GenomicRanges, SummarizedExperiment, rtracklayer, parallel,
        betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
git_url: https://git.bioconductor.org/packages/BiSeq
git_branch: devel
git_last_commit: 773a1ea
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.24
Date/Publication: 2026-05-18
NeedsCompilation: no
Packaged: 2026-05-18 21:25:52 UTC; biocbuild
Built: R 4.6.0; ; 2026-05-19 04:43:55 UTC; unix
