clusterScoring          Score CDR3 clusters using the GLIPH or GLIPH2
                        algorithm
deNovoTCRs              Generate de novo TCR sequences
findMotifs              Find continuous and discontinuous sequence
                        motifs
getGLIPHreference       Get or download the immGLIPH reference list
getRandomSubsample      Draw a stratified random subsample from the
                        reference repertoire
gliph_input_data        Example TCR input data
gliph_sce               Example SingleCellExperiment with TCR clonal
                        information
gTRB                    Germline TCR-beta CDR3 fragments
loadGLIPH               Load saved GLIPH results from disk
plotNetwork             Visualize TCR convergence group network
ref_cluster_sizes       Cluster size probabilities in naive reference
                        repertoire
reference_list          GLIPH reference repertoire list (external data)
runGLIPH                Run the GLIPH or GLIPH2 TCR clustering
                        algorithm
