Package: augere.screen
Version: 0.99.2
Date: 2026-04-12
Title: Automatic Generation of Functional Screen Analyses
Description: Implements pipelines for generating functional screen
        analysis reports in the augere framework. This uses voom to
        test for differential abundance of barcodes with consolidation
        into gene-level statistics. Each pipeline function generates a
        self-contained Rmarkdown report with all of the steps required
        to reproduce the analysis.
Authors@R: person("Aaron", "Lun", role=c("cre", "aut"), email="infinite.monkeys.with.keyboards@gmail.com", comment=c(ORCID="0000-0002-3564-4813"))
License: MIT + file LICENSE
Imports: stats, limma, edgeR, metapod, S4Vectors, augere.core,
        augere.de
Suggests: testthat, knitr, rmarkdown, BiocStyle, SummarizedExperiment
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/augere-bioinfo/augere.screen
BugReports: https://github.com/augere-bioinfo/augere.screen/issues
biocViews: WorkflowManagement, ReportWriting, GeneTarget,
        FunctionalGenomics
Config/pak/sysreqs: libssl-dev libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-14 22:30:59 UTC
RemoteUrl: https://github.com/bioc/augere.screen
RemoteRef: HEAD
RemoteSha: 295a1bd64f84a65e9730d5453caf003e191324a4
NeedsCompilation: no
Packaged: 2026-05-15 06:34:41 UTC; root
Author: Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; ; 2026-05-15 06:41:19 UTC; unix
