# Generated by roxygen2: do not edit by hand

export(Random_spongEffects)
export(build_classifier_central_genes)
export(calibrate_model)
export(define_modules)
export(enrichment_modules)
export(filter_ceRNA_network)
export(get_central_modules)
export(plot_accuracy_sensitivity_specificity)
export(plot_confusion_matrices)
export(plot_density_scores)
export(plot_heatmaps)
export(plot_involved_miRNAs_to_modules)
export(plot_top_modules)
export(prepare_metabric_for_spongEffects)
export(prepare_tcga_for_spongEffects)
export(sample_zero_mscor_cov)
export(sample_zero_mscor_data)
export(sponge)
export(sponge_build_null_model)
export(sponge_compute_p_values)
export(sponge_edge_centralities)
export(sponge_gene_miRNA_interaction_filter)
export(sponge_network)
export(sponge_node_centralities)
export(sponge_plot_network)
export(sponge_plot_network_centralities)
export(sponge_plot_simulation_results)
export(sponge_run_benchmark)
export(sponge_subsampling)
import(Biobase)
import(ComplexHeatmap)
import(MetBrewer)
import(caret)
import(cvms)
import(foreach)
import(ggplot2)
import(ggridges)
import(grid)
import(logger)
import(stringr)
import(tidyr)
import(tnet)
importFrom(Biobase,exprs)
importFrom(MASS,ginv)
importFrom(MASS,mvrnorm)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useDataset)
importFrom(biomaRt,useMart)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setkey)
importFrom(doRNG,"%dorng%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,slice)
importFrom(dplyr,summarize)
importFrom(dplyr,transmute)
importFrom(dplyr,ungroup)
importFrom(foreach,foreach)
importFrom(gRbase,combn_prim)
importFrom(gRbase,cov2pcor)
importFrom(ggpubr,ggarrange)
importFrom(glmnet,cv.glmnet)
importFrom(igraph,E)
importFrom(igraph,betweenness)
importFrom(igraph,degree)
importFrom(igraph,edge_betweenness)
importFrom(igraph,eigen_centrality)
importFrom(igraph,graph.data.frame)
importFrom(iterators,icount)
importFrom(iterators,idiv)
importFrom(iterators,iter)
importFrom(iterators,nextElem)
importFrom(logger,appender_file)
importFrom(logger,log_threshold)
importFrom(methods,is)
importFrom(ppcor,pcor)
importFrom(ppcor,pcor.test)
importFrom(randomForest,importance)
importFrom(rlang,is_empty)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cov2cor)
importFrom(stats,df)
importFrom(stats,lm)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stats,xtabs)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(utils,head)
importFrom(utils,read.delim)
