Package: GEOquery
Type: Package
Title: Get data from NCBI Gene Expression Omnibus (GEO)
Version: 2.81.28
Date: 2026-07-17
Authors@R: 
  c(person(given = "Sean",
           family = "Davis",
           role = c("aut", "cre"),
           email = "seandavi@gmail.com",
           comment = c(ORCID = "0000-0002-8991-6458")))
BugReports: https://github.com/seandavi/GEOquery/issues/new
Depends: R (>= 4.1.0), methods, Biobase
Imports: readr (>= 1.3.1), xml2, dplyr, data.table, tidyr, magrittr,
        limma, curl, rentrez, R.utils, stringr, SummarizedExperiment,
        S4Vectors, rvest, httr2, rlang, BiocFileCache
Suggests: knitr, rmarkdown, BiocGenerics, testthat, covr, markdown,
        quarto, SingleCellExperiment, TENxIO, anndataR, BiocIO, Seurat
VignetteBuilder: quarto
URL: https://github.com/seandavi/GEOquery,
        http://seandavi.github.io/GEOquery,
        http://seandavi.github.io/GEOquery/
biocViews: GeneExpression, Transcriptomics, Microarray, RNASeq,
        Sequencing, SingleCell, DataImport, ThirdPartyClient,
        OneChannel, TwoChannel, SAGE
Description: The NCBI Gene Expression Omnibus (GEO) is a public repository of
    high-throughput functional genomics data, including microarray, RNA-seq,
    and single-cell experiments. GEOquery is the bridge between GEO and
    Bioconductor: it downloads and parses GEO Series (GSE), Sample (GSM),
    Platform (GPL), and DataSet (GDS) records. By default it parses GEO Series
    Matrix files into Bioconductor 'ExpressionSet' objects; it can also parse
    the full SOFT format into GEOquery's own S4 classes, retrieve NCBI-computed
    RNA-seq quantifications, download supplementary files, and search GEO.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/GEOquery
git_branch: devel
git_last_commit: 504d4d3
git_last_commit_date: 2026-07-17
Repository: Bioconductor 3.24
Date/Publication: 2026-07-19
NeedsCompilation: no
Packaged: 2026-07-19 21:11:26 UTC; biocbuild
Author: Sean Davis [aut, cre] (ORCID: <https://orcid.org/0000-0002-8991-6458>)
Maintainer: Sean Davis <seandavi@gmail.com>
Built: R 4.6.1; ; 2026-07-20 05:42:06 UTC; unix
