% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/DeeDeeExperiment-methods.R
\name{DeeDeeExperiment-misc}
\alias{DeeDeeExperiment-misc}
\alias{show,DeeDeeExperiment-method}
\alias{summary,DeeDeeExperiment-method}
\title{Miscellaneous DeeDeeExperiment methods}
\usage{
\S4method{show}{DeeDeeExperiment}(object)

\S4method{summary}{DeeDeeExperiment}(object, FDR = 0.05, show_scenario_info = FALSE, ...)
}
\arguments{
\item{object}{a \code{\link{DeeDeeExperiment}} object}

\item{FDR}{Numeric, sets the significance threshold for subsetting
differentially expressed genes based on adjusted p-values. Defaults to 0.05}

\item{show_scenario_info}{Logical; if TRUE, displays the associated scenario
info for each DE contrast, if available. Defaults to FALSE}

\item{...}{additional argument passed to the summary method.
Currently supports:
\itemize{
\item \code{FDR}: Numeric, sets the significance threshold for subsetting
differentially expressed genes based on adjusted p-values. Defaults to 0.05
\item \code{show_scenario_info}: Logical; if \code{TRUE}, displays the
associated scenario info for each DE contrast, if available.
}}
}
\value{
Returns NULL
}
\description{
Miscellaneous methods for the \code{\link{DeeDeeExperiment}} class and its
descendants that do not fit into any other documentation category such as,
for example, show and summary methods.
}
