DEScan2 v1.29.1
- updating extdata objects to the latest object versions

DEScan2 v1.19.1
- now save utilities produce warnings instead of errors in case of existing file
- save as tsv has additional parameters based on write.table utils function

DEScan2 v1.17.2
restoring working version of DEScan2

DEScan2 v1.15.4
- adding coverageFlag to the findOverlapsOverSamples function: see doc

DEScan2 v1.15.3
- fixing glue::collapse deprecation

DEScan2 v1.11.2
- patching error with no score colname found by finalRegion functions
- fixing file.path into countFinalRegions

DEScan2 v1.9.2
- adding support for narrow and broad peak loading

DEScan2 v1.9.1
- removing check on chromosome string from callPeaks and keepRelevantChrs

DEScan2 v1.3.2
- fixed finalRegions vignettes error
- minor adjustment fixing

DEScan2 v1.3.1
- fixed RleListToRleMatrix check error

DEScan2 v1.1.2
- minor bug fixing

DEScan2 v1.1.1
- updated vignette with parallel computing section

DEScan2 v0.99.9
- finalRegions and findPeaks now works with bplapply
- minor bug fixing

DEScan2 v0.99.8
- countFinalRegions now creates the saving directory/ies

DEScan2 v0.99.7
- countFinalRegions bug fixing on columnname parameter

DEScan2 v0.99.6
- countFinalRegions added parameter for general carriers column name

DEScan2 v0.99.5
- finalRegions bug on empty chromosomes fixed
- test added on readFilesAsGRangesList
- minor fixing

DEScan2 v0.99.1
- finalRegions function now works on general mcols score by using the
    scorecolname parameter.

DEScan2 v0.99.0
- findPeaks function works with GRanges objects and produces a GRangesList.
- finalRegions function takes in input a GRangesList and returns a GRanges.
- countFinalRegions function takes in input a GRanges with a z-score mcols and
    returns a SummarizedExperiment object with a matrix of counts as assay.
