citHeader("To cite the XCMS package in publications use:")

citEntry(entry="article",
         author=personList(
             as.person("Philippine Louail"),
             as.person("Carl Brunius"),
             as.person("Mar Garcia-Aloy"),
             as.person("William Kumler"),
             as.person("Norman Storz"),
             as.person("Jan Stanstrup"),
             as.person("Hendrik Treutler"),
             as.person("Pablo Vangeenderhuysen"),
             as.person("Michael Witting"),
             as.person("Steffen Neumann"),
             as.person("Johannes Rainer")),
   title="xcms in Peak Form: Now Anchoring a Complete Metabolomics Data Preprocessing and Analysis Software Ecosystem",
   journal="Analytical Chemistry",
   year="2025",
   doi = "10.1021/acs.analchem.5c04338",
   URL = "https://doi.org/10.1021/acs.analchem.5c04338",
   textVersion = paste("Philippine Louail, Carl Brunius, Mar Garcia-Aloy, William Kumler, Norman Storz, Jan Stanstrup, Hendrik Treutler, Pablo Vangeenderhuysen, Michael Witting, Steffen Neumann, and Johannes Rainer:",
                       "xcms in Peak Form: Now Anchoring a Complete Metabolomics Data Preprocessing and Analysis Software Ecosystem",
		       "Analytical Chemistry, (2025), DOI:10.1021/acs.analchem.5c04338"))

citEntry(entry="article",
   author="Smith, C.A. and Want, E.J. and O'Maille, G. and Abagyan,R. and Siuzdak, G.",
   title="XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching and identification",
   journal="Analytical Chemistry",
   year="2006",
   volume="78",
   pages="779--787",
   textVersion = paste("Smith, C.A. and Want, E.J. and O'Maille, G. and Abagyan,R. and Siuzdak, G.:",
		       "XCMS: Processing mass spectrometry data for metabolite profiling",
                       "using nonlinear peak alignment, matching and identification,",
		       "Analytical Chemistry, 78:779-787 (2006)"))

citEntry(entry="article",
   author="Ralf Tautenhahn, Christoph Boettcher, Steffen Neumann",
   title="Highly sensitive feature detection for high resolution LC/MS",
   journal="BMC Bioinformatics",
   year="2008",
   volume="9",
   pages="504",
   textVersion = paste("Ralf Tautenhahn, Christoph Boettcher, Steffen Neumann:",
   "Highly sensitive feature detection for high resolution LC/MS",
   "BMC Bioinformatics, 9:504 (2008)"))

citEntry(entry="article",
  author="H. Paul Benton, Elizabeth J. Want and Timothy M. D. Ebbels",
  title="Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data",
  journal="BIOINFORMATICS",
  year="2010",
  volume="26",
  pages="2488",
  textVersion = paste("H. Paul Benton, Elizabeth J. Want and Timothy M. D. Ebbels",
  "Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data",
  "Bioinformatics, 26:2488 (2010)"))

citFooter(paste("Some functions (e.g. group.mzClust, findPeaks.MSW() or retcor.obiwarp() use 3rd",
                 "party algorithms, see manpages and related packages",
	         "for respective citations."))
