Package: xCell2
Type: Package
Title: A Tool for Generic Cell Type Enrichment Analysis
Version: 1.3.0
Authors@R: 
    c(person(given = "Almog", 
             family = "Angel", 
             role = c("aut", "cre"),
             email = "almog.angel@campus.technion.ac.il",
             comment = c(ORCID = "0009-0001-3297-6935")),
             person(given = "Dvir", 
             family = "Aran", 
             role = "aut",
             email = "dviraran@technion.ac.il",
             comment = c(ORCID = "0000-0001-6334-5039")))
Description: xCell2 provides methods for cell type enrichment analysis
        using cell type signatures. It includes three main functions -
        1. xCell2Train for training custom references objects from bulk
        or single-cell RNA-seq datasets. 2. xCell2Analysis for
        conducting the cell type enrichment analysis using the custom
        reference. 3. xCell2GetLineage for identifying dependencies
        between different cell types using ontology.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0.0)
biocViews: GeneExpression, Transcriptomics, Microarray, RNASeq,
        SingleCell, DifferentialExpression, ImmunoOncology,
        GeneSetEnrichment
Imports: SummarizedExperiment, SingleCellExperiment, Rfast, singscore,
        AnnotationHub, ontologyIndex, tibble, dplyr, BiocParallel,
        Matrix, minpack.lm, pracma, methods, readr, magrittr, progress,
        quadprog
Suggests: testthat, knitr, rmarkdown, ggplot2, randomForest, tidyr,
        EnhancedVolcano, BiocStyle
RoxygenNote: 7.3.2
VignetteBuilder: knitr
URL: https://github.com/AlmogAngel/xCell2
BugReports: https://github.com/AlmogAngel/xCell2/issues
Config/pak/sysreqs: make libicu-dev libpng-dev libxml2-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:33:51 UTC
RemoteUrl: https://github.com/bioc/xCell2
RemoteRef: HEAD
RemoteSha: c6b6c48ab92901832818349f1d1a5484a2e7f834
NeedsCompilation: no
Packaged: 2025-10-30 15:30:57 UTC; root
Author: Almog Angel [aut, cre] (ORCID: <https://orcid.org/0009-0001-3297-6935>),
  Dvir Aran [aut] (ORCID: <https://orcid.org/0000-0001-6334-5039>)
Maintainer: Almog Angel <almog.angel@campus.technion.ac.il>
Built: R 4.6.0; ; 2025-10-30 15:34:19 UTC; windows
