Package: tpSVG
Title: Thin plate models to detect spatially variable genes
Version: 1.7.0
Authors@R: c(
    person("Boyi", "Guo",
           email = "boyi.guo.work@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2950-2349")),
    person("Lukas M.", "Weber", 
           email = "lukas.weber.edu@gmail.com", 
           role = c("ctb"), 
           comment = c(ORCID = "0000-0002-3282-1730")), 
    person("Stephanie C.", "Hicks", 
           email = "shicks19@jhu.edu", 
           role = c("aut"), 
           comment = c(ORCID = "0000-0002-7858-0231")))
Description: The goal of `tpSVG` is to detect and visualize spatial
        variation in the gene expression for spatially resolved
        transcriptomics data analysis. Specifically, `tpSVG` introduces
        a family of count-based models, with generalizable parametric
        assumptions such as Poisson distribution or negative binomial
        distribution. In addition, comparing to currently available
        count-based model for spatially resolved data analysis, the
        `tpSVG` models improves computational time, and hence greatly
        improves the applicability of count-based models in SRT data
        analysis.
License: MIT + file LICENSE
URL: https://github.com/boyiguo1/tpSVG
BugReports: https://github.com/boyiguo1/tpSVG/issues
biocViews: Spatial, Transcriptomics, GeneExpression, Software,
        StatisticalMethod, DimensionReduction, Regression,
        Preprocessing
Encoding: UTF-8
Depends: mgcv, R (>= 4.4)
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: stats, BiocParallel, MatrixGenerics, methods,
        SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Suggests: BiocStyle, knitr, nnSVG, rmarkdown, scran, scuttle,
        STexampleData, escheR, ggpubr, colorspace, BumpyMatrix,
        sessioninfo, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:28:17 UTC
RemoteUrl: https://github.com/bioc/tpSVG
RemoteRef: HEAD
RemoteSha: 762d511a6bb212ebe352f7feaf22912c9391e60a
NeedsCompilation: no
Packaged: 2025-10-30 14:29:51 UTC; root
Author: Boyi Guo [aut, cre] (ORCID: <https://orcid.org/0000-0003-2950-2349>),
  Lukas M. Weber [ctb] (ORCID: <https://orcid.org/0000-0002-3282-1730>),
  Stephanie C. Hicks [aut] (ORCID:
    <https://orcid.org/0000-0002-7858-0231>)
Maintainer: Boyi Guo <boyi.guo.work@gmail.com>
Built: R 4.6.0; ; 2025-10-30 14:32:17 UTC; windows
