Package: tanggle
Type: Package
Title: Visualization of Phylogenetic Networks
Version: 1.17.0
Authors@R: c(person("Klaus", "Schliep", email="klaus.schliep@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2941-0161")),
             person("Marta", "Vidal-Garcia", role="aut"), 
             person("Claudia", "Solis-Lemus", role="aut", 
    email="solislemus@wisc.edu", comment = c(ORCID = "0000-0002-9789-8915")), 
             person("Leann", "Biancani", role="aut"), 
             person("Eren", "Ada", role="aut"), 
             person("L. Francisco", "Henao Diaz", role="aut"), 
             person("Guangchuang", "Yu", role = c("ctb")),
             person("Joshua", "Justison", role="aut"))
Description: Offers functions for plotting split (or implicit) networks
        (unrooted, undirected) and explicit networks (rooted, directed)
        with reticulations extending. 'ggtree' and using functions from
        'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017]
        to allow the visualization of phylogenetic networks using the
        'ggplot2' syntax. It offers an alternative to the plot
        functions already available in 'ape' Paradis and Schliep (2019)
        <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep
        (2011) <doi:10.1093/bioinformatics/btq706>.
Depends: R (>= 4.1), ggplot2 (>= 3.0.0), ggtree
Imports: ape (>= 5.0), phangorn (>= 2.12), rlang, utils, methods, dplyr
Suggests: tinytest, BiocStyle, ggimage, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Software, Visualization, Phylogenetics, Alignment,
        Clustering, MultipleSequenceAlignment, DataImport
License: Artistic-2.0
URL: https://klausvigo.github.io/tanggle/,
        https://github.com/KlausVigo/tanggle
BugReports: https://github.com/KlausVigo/tanggle/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Roxygen: list(old_usage = TRUE)
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libglpk-dev make libicu-dev libpng-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:11:48 UTC
RemoteUrl: https://github.com/bioc/tanggle
RemoteRef: HEAD
RemoteSha: a5309c6112f7732581573122ce70a6d8502cf5c9
NeedsCompilation: no
Packaged: 2025-11-12 08:14:28 UTC; root
Author: Klaus Schliep [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2941-0161>),
  Marta Vidal-Garcia [aut],
  Claudia Solis-Lemus [aut] (ORCID:
    <https://orcid.org/0000-0002-9789-8915>),
  Leann Biancani [aut],
  Eren Ada [aut],
  L. Francisco Henao Diaz [aut],
  Guangchuang Yu [ctb],
  Joshua Justison [aut]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>
Built: R 4.6.0; ; 2025-11-12 08:16:06 UTC; windows
