Package: ssPATHS
Type: Package
Title: ssPATHS: Single Sample PATHway Score
Version: 1.25.0
Author: Natalie R. Davidson
Maintainer: Natalie R. Davidson <natalie.davidson@inf.ethz.ch>
Description: This package generates pathway scores from expression data
        for single samples after training on a reference cohort. The
        score is generated by taking the expression of a gene set
        (pathway) from a reference cohort and performing linear
        discriminant analysis to distinguish samples in the cohort that
        have the pathway augmented and not. The separating hyperplane
        is then used to score new samples.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: ROCR, dml, MESS
Suggests: ggplot2, testthat (>= 2.1.0)
Depends: R (>= 3.5.0), SummarizedExperiment
RoxygenNote: 6.1.1
biocViews: Software, GeneExpression, BiomedicalInformatics, RNASeq,
        Pathways, Transcriptomics, DimensionReduction, Classification
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        make libicu-dev libpng-dev libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:54:57 UTC
RemoteUrl: https://github.com/bioc/ssPATHS
RemoteRef: HEAD
RemoteSha: 279a5e8e4f6bf891de941c4c02c65a7be3ec67c2
NeedsCompilation: no
Packaged: 2025-10-30 12:48:07 UTC; root
Built: R 4.6.0; ; 2025-10-30 12:50:07 UTC; windows
