Package: seqCAT
Title: High Throughput Sequencing Cell Authentication Toolkit
Version: 1.33.0
Authors@R: person("Erik", "Fasterius", email = "erik.fasterius@outlook.com",
    role = c("aut", "cre"))
Description: The seqCAT package uses variant calling data (in the form
        of VCF files) from high throughput sequencing technologies to
        authenticate and validate the source, function and
        characteristics of biological samples used in scientific
        endeavours.
Depends: R (>= 3.6), GenomicRanges (>= 1.26.4), VariantAnnotation(>=
        1.20.3)
Imports: dplyr (>= 0.5.0), GenomeInfoDb (>= 1.13.4), ggplot2 (>=
        2.2.1), grid (>= 3.5.0), IRanges (>= 2.8.2), methods,
        rtracklayer, rlang, scales (>= 0.4.1), S4Vectors (>= 0.12.2),
        stats, SummarizedExperiment (>= 1.4.0), tidyr (>= 0.6.1), utils
Suggests: knitr, BiocStyle, rmarkdown, testthat, BiocManager
biocViews: Coverage, GenomicVariation, Sequencing, VariantAnnotation
License: MIT + file LICENCE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:40:54 UTC
RemoteUrl: https://github.com/bioc/seqCAT
RemoteRef: HEAD
RemoteSha: 52e812d5c8e2d4e819dd2c5f2c1edcf6899e08f5
NeedsCompilation: no
Packaged: 2025-10-30 10:33:29 UTC; root
Author: Erik Fasterius [aut, cre]
Maintainer: Erik Fasterius <erik.fasterius@outlook.com>
Built: R 4.6.0; ; 2025-10-30 10:35:54 UTC; windows
