Package: scran
Version: 1.40.0
Date: 2026-04-07
Title: Methods for Single-Cell RNA-Seq Data Analysis
Description: Implements miscellaneous functions for interpretation of
        single-cell RNA-seq data. Methods are provided for assignment
        of cell cycle phase, detection of highly variable and
        significantly correlated genes, identification of marker genes,
        and other common tasks in routine single-cell analysis
        workflows.
Authors@R: 
    c(person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"), 
    person("Karsten", "Bach", role = "aut"),
    person("Jong Kyoung", "Kim", role = "ctb"), 
    person("Antonio", "Scialdone", role="ctb"))
Depends: SingleCellExperiment, scuttle
Imports: SummarizedExperiment, S4Vectors, BiocGenerics, BiocParallel,
        Rcpp, stats, methods, utils, Matrix, edgeR, limma, igraph,
        statmod, MatrixGenerics, S4Arrays, DelayedArray, BiocSingular,
        bluster, metapod, dqrng, beachmat
Suggests: testthat, BiocStyle, knitr, rmarkdown, DelayedMatrixStats,
        HDF5Array, scRNAseq, dynamicTreeCut, ResidualMatrix,
        ScaledMatrix, DESeq2, pheatmap, scater, scrapper
biocViews: ImmunoOncology, Normalization, Sequencing, RNASeq, Software,
        GeneExpression, Transcriptomics, SingleCell, Clustering
LinkingTo: Rcpp, beachmat, BH, dqrng, scuttle
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++11
RoxygenNote: 7.3.3
URL: https://github.com/MarioniLab/scran/
BugReports: https://github.com/MarioniLab/scran/issues
Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:43:17 UTC
RemoteUrl: https://github.com/bioc/scran
RemoteRef: RELEASE_3_23
RemoteSha: 24a6fe7a83a1b6a0e85c2856c2d39b767b4597fd
Packaged: 2026-05-30 09:04:22 UTC; root
Author: Aaron Lun [aut, cre],
  Karsten Bach [aut],
  Jong Kyoung Kim [ctb],
  Antonio Scialdone [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-05-30 09:16:49 UTC; windows
Archs: x64
