Package: qsvaR
Title: Generate Quality Surrogate Variable Analysis for Degradation
        Correction
Version: 1.15.0
Date: 2025-09-29
Authors@R: 
    c(
    person("Joshua", "Stolz", email = "jstolz80@gmail.com",
        role = c("aut"),
        comment = c(ORCID = "0000-0001-5694-5247")),
	person("Hedia", "Tnani", email = "hediatnani0@gmail.com",
	    role = c("ctb"),
	    comment = c(ORCID = "0000-0002-0380-9740")),
    person("Leonardo", "Collado-Torres", role = c("ctb"),
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person("Nicholas J.", "Eagles", email = "nickeagles77@gmail.com",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9808-5254"))
    )
Description: The qsvaR package contains functions for removing the
        effect of degration in rna-seq data from postmortem brain
        tissue. The package is equipped to help users generate
        principal components associated with degradation. The
        components can be used in differential expression analysis to
        remove the effects of degradation.
License: Artistic-2.0
URL: https://github.com/LieberInstitute/qsvaR
BugReports: https://support.bioconductor.org/t/qsvaR
biocViews: Software, WorkflowStep, Normalization, BiologicalQuestion,
        DifferentialExpression, Sequencing, Coverage
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: BiocFileCache, BiocStyle, covr, knitr, limma, RefManageR,
        rmarkdown, sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: dplyr, sva, stats, ggplot2, rlang, methods
Depends: R (>= 4.2), SummarizedExperiment
LazyData: true
VignetteBuilder: knitr
Config/pak/sysreqs: libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:15:51 UTC
RemoteUrl: https://github.com/bioc/qsvaR
RemoteRef: HEAD
RemoteSha: 834d31ec1c58ca92c055d5392bc1c92db4d33f59
NeedsCompilation: no
Packaged: 2025-11-03 03:40:49 UTC; root
Author: Joshua Stolz [aut] (ORCID: <https://orcid.org/0000-0001-5694-5247>),
  Hedia Tnani [ctb] (ORCID: <https://orcid.org/0000-0002-0380-9740>),
  Leonardo Collado-Torres [ctb] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>),
  Nicholas J. Eagles [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9808-5254>)
Maintainer: Nicholas J. Eagles <nickeagles77@gmail.com>
Built: R 4.6.0; ; 2025-11-03 03:43:19 UTC; windows
