# Generated by roxygen2: do not edit by hand

export(buildModel)
export(defIgRanges)
export(evalModel)
export(prepIgBam)
export(runPRAM)
export(selModel)
import(data.table)
import(methods)
importFrom(BiocGenerics,"strand<-")
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,strand)
importFrom(BiocGenerics,unlist)
importFrom(BiocParallel,SnowParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(GenomicAlignments,cigar)
importFrom(GenomicAlignments,readGAlignments)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,intersect)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,setdiff)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,gaps)
importFrom(IRanges,subsetByOverlaps)
importFrom(IRanges,width)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,filterBam)
importFrom(Rsamtools,idxstatsBam)
importFrom(Rsamtools,indexBam)
importFrom(Rsamtools,mergeBam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(S4Vectors,FilterRules)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,split)
importFrom(Seqinfo,seqnames)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(rtracklayer,readGFF)
importFrom(tools,file_path_sans_ext)
importFrom(utils,read.table)
importFrom(utils,write.table)
