Package: oligoClasses
Version: 1.73.0
Title: Classes for high-throughput arrays supported by oligo and crlmm
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com> and Robert
 Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.14)
Imports: BiocGenerics (>= 0.27.1), Biobase (>= 2.17.8), methods,
        graphics, IRanges (>= 2.5.17), GenomicRanges (>= 1.23.7),
        SummarizedExperiment, Biostrings (>= 2.23.6), affyio (>=
        1.23.2), foreach, BiocManager, utils, S4Vectors (>= 0.9.25),
        RSQLite, DBI, ff
Enhances: doMC, doMPI, doSNOW, doParallel, doRedis
Suggests: hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6,
        pd.genomewidesnp.5, pd.mapping50k.hind240,
        pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp,
        genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6),
        RUnit, human370v1cCrlmm, VanillaICE, crlmm
Description: This package contains class definitions, validity checks,
        and initialization methods for classes used by the oligo and
        crlmm packages.
License: GPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R utils-general.R utils-lds.R
        utils-parallel.R methods-gSet.R initialize-methods.R
        methods-AlleleSet.R methods-AnnotatedDataFrame.R
        methods-FeatureSet.R methods-AssayData.R
        methods-SnpFeatureSet.R methods-oligoSnpSet.R
        methods-CopyNumberSet.R methods-CNSet.R methods-PDInfo.R
        methods-RangedDataCNV.R methods-SnpSet.R
        methods-GenomeAnnotatedDataFrame.R methods-BeadStudioSet.R
        methods-BeadStudioSetList.R methods-gSetList.R
        methods-GRanges.R methods-SummarizedExperiment.R show-methods.R
        functions.R zzz.R
biocViews: Infrastructure
RoxygenNote: 6.1.1
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 13:59:50 UTC
RemoteUrl: https://github.com/bioc/oligoClasses
RemoteRef: HEAD
RemoteSha: 924ec0ac27d9ec4e60b9f611025fcf669d3fcd6c
NeedsCompilation: no
Packaged: 2025-11-02 15:22:18 UTC; root
Built: R 4.6.0; ; 2025-11-02 15:30:03 UTC; windows
