Package: moanin
Title: An R Package for Time Course RNASeq Data Analysis
Version: 1.19.0
Authors@R: c(person("Elizabeth", "Purdom", email="epurdom@stat.berkeley.edu",
                    role=c("aut"),
                    comment=c("orcid"="https://orcid.org/0000-0001-9455-7990")),
             person("Nelle", "Varoquaux", role=c("aut", "cre"),
                    email="nelle.varoquaux@gmail.com",
                    comment=c(orcid="https://orcid.org/0000-0002-8748-6546")))
Description: Simple and efficient workflow for time-course gene
        expression data, built on publictly available open-source
        projects hosted on CRAN and bioconductor. moanin provides
        helper functions for all the steps required for analysing
        time-course data using functional data analysis: (1) functional
        modeling of the timecourse data; (2) differential expression
        analysis; (3) clustering; (4) downstream analysis.
Depends: R (>= 4.0), SummarizedExperiment, topGO, stats
Imports: S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics,
        methods, grDevices, reshape2, NMI, zoo, ClusterR, splines,
        matrixStats
Suggests: testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown,
        markdown, covr, BiocStyle
VignetteBuilder: knitr
License: BSD 3-clause License + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.1
biocViews: TimeCourse, GeneExpression, RNASeq, Microarray,
        DifferentialExpression, Clustering
Config/pak/sysreqs: libgmp3-dev libicu-dev libpng-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:04:42 UTC
RemoteUrl: https://github.com/bioc/moanin
RemoteRef: HEAD
RemoteSha: 9becdba4f492509fbbf9c7dc4ff08a1f7e9d1ad9
NeedsCompilation: no
Packaged: 2025-11-02 15:08:46 UTC; root
Author: Elizabeth Purdom [aut] (ORCID: <https://orcid.org/0000-0001-9455-7990>),
  Nelle Varoquaux [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8748-6546>)
Maintainer: Nelle Varoquaux <nelle.varoquaux@gmail.com>
Built: R 4.6.0; ; 2025-11-02 15:11:13 UTC; windows
