Package: lcmsPlot
Type: Package
Title: Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS)
        data visualisation package
Version: 0.99.16
Authors@R: c(
    person(
        "Ossama",
        "Edbali",
        role=c("aut","cre"),
        email="o.edbali@bham.ac.uk",
        comment = c(ORCID = "0000-0003-0132-8668")),
    person(
        c("Ralf","Johannes", "Maria"),
        "Weber",
        role=c("aut"),
        email="r.j.weber@bham.ac.uk",
        comment = c(ORCID = "0000-0002-8796-4771")))
Description: lcmsPlot is an R package designed for visualising Liquid
        Chromatography-Mass Spectrometry (LC-MS) data with
        publication-ready high-quality plots. The package enables users
        to generate and customise chromatograms, mass traces, spectra,
        and more with fine-tuned aesthetics and annotation options.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.4.0)
Imports: methods, rlang, dplyr, tidyr, BiocParallel, MSnbase, xcms,
        MsExperiment, mzR, Spectra, MsBackendMsp, S4Vectors, ggplot2,
        scales, patchwork, DBI, RSQLite
Suggests: knitr, rmarkdown, BiocStyle, openxlsx, faahKO, testthat (>=
        3.0.0)
Collate: 'lcmsPlot-package.R' 'zzz.R' 'helpers-data.R' 'helpers-s4.R'
        'io-raw-data.R' 'options.R' 'processing-xcms.R' 'data-source.R'
        'data-source-compound-discoverer.R' 'data-source-mzmine.R'
        'data-source-ms-dial.R' 'constructors-chromatograms.R'
        'constructors-spectra.R' 'data-adapters.R' 'plot-units.R'
        'plot-chromatogram.R' 'plot-mass-trace.R' 'plot-spectrum.R'
        'plot-total-ion-current.R' 'plot-intensity-map.R'
        'plot-rt-diff.R' 'plot-variants.R' 'plot.R'
        'lcmsPlotDataContainer-class.R' 'creators-chromatograms.R'
        'creators-intensity-map.R' 'creators-rt-diff.R'
        'creators-spectra.R' 'creators-total-ion-current.R'
        'lcmsPlot-class.R'
VignetteBuilder: knitr
URL: https://github.com/computational-metabolomics/lcmsPlot
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
biocViews: Metabolomics, MassSpectrometry
BugReports: https://github.com/computational-metabolomics/lcmsPlot/issues
Config/testthat/edition: 3
Config/pak/sysreqs: libglpk-dev make libicu-dev libxml2-dev
        libnetcdf-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-02-07 23:48:33 UTC
RemoteUrl: https://github.com/bioc/lcmsPlot
RemoteRef: HEAD
RemoteSha: d956f01ed0871541e9b6caa2a7b524101b4b861d
NeedsCompilation: no
Packaged: 2026-02-19 06:04:56 UTC; root
Author: Ossama Edbali [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0132-8668>),
  Ralf Johannes Maria Weber [aut] (ORCID:
    <https://orcid.org/0000-0002-8796-4771>)
Maintainer: Ossama Edbali <o.edbali@bham.ac.uk>
Built: R 4.6.0; ; 2026-02-19 06:07:28 UTC; windows
