Package: erccdashboard
Type: Package
Title: Assess Differential Gene Expression Experiments with ERCC
        Controls
Version: 1.45.0
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <sarah.munro@gmail.com>
Description: Technical performance metrics for differential gene
        expression experiments using External RNA Controls Consortium
        (ERCC) spike-in ratio mixtures.
Depends: R (>= 4.0), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)
Imports: edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr,
        qvalue, reshape2, ROCR, scales, stringr, knitr
License: GPL (>=2)
Collate: runDashboard.R initDat.R dashboardFile.R plotAdjust.R
        loadERCCInfo.R loadExpMeas.R getDesignMat.R normalizeDat.R
        prepERCCDat.R est_r_m.R dynRangePlot.R geneExprTest.R
        testDECount.R testDEArray.R erccROC.R estLODR.R printLODRres.R
        saveERCCPlots.R maSignal.R annotLODR.R
biocViews: ImmunoOncology, GeneExpression, Transcription,
        AlternativeSplicing, DifferentialExpression,
        DifferentialSplicing, Genetics, Microarray, mRNAMicroarray,
        RNASeq, BatchEffect, MultipleComparison, QualityControl
LazyData: yes
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown
Packaged: 2025-11-05 07:19:17 UTC; root
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: libicu-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:21:01 UTC
RemoteUrl: https://github.com/bioc/erccdashboard
RemoteRef: HEAD
RemoteSha: 44713e88a6436730127574c86786f53d44c3abbe
NeedsCompilation: no
Built: R 4.6.0; ; 2025-11-05 07:20:47 UTC; windows
