Package: dominatR
Title: Feature Dominance-based R Package for Genomic Data
Version: 0.99.5
Date: 2025-09-10
Authors@R: c(
    person(
    given = "Simon", 
    family = "Lizarazo", 
    role = c("aut", "cre"), 
    email = "silizarazoch@gmail.com", 
    comment = c(ORCID = "0009-0001-8974-6225")
    ),
    person(
    given = "Ethan", 
    family = "Chen", 
    role = c("aut"), 
    email = "yitian7@illinois.edu"
    ),
    person(
    given = "Rajendra", 
    family = "K C", 
    role = c("aut")
    ),
    person(
    given = "Kevin", 
    family = "Van Bortle", 
    role = c("aut", "cph"), 
    email = "kvbortle@illinois.edu")
    )
Description: dominatR is an R package for quantifying and visualizing
        feature dominance in datasets.  dominatR applies concepts drawn
        from physics such as center of mass and shannon's entropy to
        effectively visualize features (e.g. genes) that are present
        within a specific context or condition. The package integrates,
        dataframes, matrices and SummerizedExperiment objects and is
        able to perform common genomic normalization methods. The key
        aspect is the generation of plots that serve to highlight
        context-relevant feature dominance.
License: MIT + file LICENSE
URL: https://github.com/VanBortleLab/dominatR,
        https://vanbortlelab.github.io/dominatR/
BugReports: https://github.com/VanBortleLab/dominatR/issues
Encoding: UTF-8
Depends: R (>= 4.4.0)
Imports: scales, ggnewscale, SummarizedExperiment, dplyr, rlang,
        ggforce, geomtextpath, ggplot2
Suggests: BiocStyle, airway, tidyverse, knitr, rmarkdown, testthat (>=
        3.0.0), dominatRData
VignetteBuilder: knitr
biocViews: Visualization, Normalization, Classification, GeneExpression
Config/testthat/edition: 3
RoxygenNote: 7.3.3
Config/Needs/website: rmarkdown
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        libharfbuzz-dev libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-19 03:16:55 UTC
RemoteUrl: https://github.com/bioc/dominatR
RemoteRef: HEAD
RemoteSha: 2c155d018d42d85c63fc2644d1b82d8a5ee45a7d
NeedsCompilation: no
Packaged: 2025-11-23 16:03:20 UTC; root
Author: Simon Lizarazo [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-8974-6225>),
  Ethan Chen [aut],
  Rajendra K C [aut],
  Kevin Van Bortle [aut, cph]
Maintainer: Simon Lizarazo <silizarazoch@gmail.com>
Built: R 4.6.0; ; 2025-11-23 16:05:12 UTC; windows
