Package: demuxmix
Title: Demultiplexing oligo-barcoded scRNA-seq data using regression
        mixture models
Version: 1.13.0
Date: 2024-01-29
Description: A package for demultiplexing single-cell sequencing
        experiments of pooled cells labeled with barcode
        oligonucleotides. The package implements methods to fit
        regression mixture models for a probabilistic classification of
        cells, including multiplet detection. Demultiplexing error
        rates can be estimated, and methods for quality control are
        provided.
Authors@R: person("Hans-Ulrich", "Klein",
    email = "hansulrich.klein@gmail.com",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-6382-9428"))
License: Artistic-2.0
Depends: R (>= 4.0.0)
Imports: stats, MASS, Matrix, ggplot2, gridExtra, methods
Suggests: BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown,
        testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: SingleCell, Sequencing, Preprocessing, Classification,
        Regression
BiocType: Software
URL: https://github.com/huklein/demuxmix
BugReports: https://github.com/huklein/demuxmix/issues
Encoding: UTF-8
RoxygenNote: 7.2.2
Config/testthat/edition: 3
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:18:30 UTC
RemoteUrl: https://github.com/bioc/demuxmix
RemoteRef: HEAD
RemoteSha: a6af3eca78f360293caae7784452bf6c126c727b
NeedsCompilation: no
Packaged: 2025-11-02 03:38:03 UTC; root
Author: Hans-Ulrich Klein [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6382-9428>)
Maintainer: Hans-Ulrich Klein <hansulrich.klein@gmail.com>
Built: R 4.6.0; ; 2025-11-02 03:40:12 UTC; windows
