Package: circRNAprofiler
Type: Package
Title: circRNAprofiler: An R-Based Computational Framework for the
        Downstream Analysis of Circular RNAs
Version: 1.25.0
Author: Simona Aufiero
Maintainer: Simona Aufiero <simo.aufiero@gmail.com>
Description: R-based computational framework for a comprehensive in
        silico analysis of circRNAs. This computational framework
        allows to combine and analyze circRNAs previously detected by
        multiple publicly available annotation-based circRNA detection
        tools. It covers different aspects of circRNAs analysis from
        differential expression analysis, evolutionary conservation,
        biogenesis to functional analysis.
License: GPL-3
Encoding: UTF-8
biocViews: Annotation, StructuralPrediction, FunctionalPrediction,
        GenePrediction, GenomeAssembly, DifferentialExpression
Depends: R (>= 4.4.0)
RoxygenNote: 7.2.3
Suggests: testthat, knitr, roxygen2, rmarkdown, devtools, gridExtra,
        ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
        BiocManager,
Imports: dplyr, magrittr, readr, rtracklayer, stringr, stringi, DESeq2,
        edgeR, GenomicRanges, IRanges, seqinr, R.utils, reshape2,
        ggplot2, utils, rlang, S4Vectors, stats, GenomeInfoDb,
        universalmotif, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
        Biostrings, gwascat, BSgenome,
VignetteBuilder: knitr
URL: https://github.com/Aufiero/circRNAprofiler
BugReports: https://github.com/Aufiero/circRNAprofiler/issues
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:53:06 UTC
RemoteUrl: https://github.com/bioc/circRNAprofiler
RemoteRef: HEAD
RemoteSha: a9049f942d3756ab2bc02908f346776316236bed
NeedsCompilation: no
Packaged: 2025-10-30 04:36:54 UTC; root
Built: R 4.6.0; ; 2025-10-30 04:42:57 UTC; windows
