Package: biovizBase
Version: 1.59.0
Title: Basic graphic utilities for visualization of genomic data.
Description: The biovizBase package is designed to provide a set of
        utilities, color schemes and conventions for genomic data. It
        serves as the base for various high-level packages for
        biological data visualization. This saves development effort
        and encourages consistency.
Authors@R: c(person("Tengfei", "Yin", role=c("aut"),
                 email="yintengfei@gmail.com"),
          person("Michael", "Lawrence", role=c("aut", "ths", "cre"),
                 email="lawremi@gmail.com"),
          person("Dianne", "Cook", role=c("aut", "ths")),
          person("Johannes", "Rainer", role="ctb"))
Depends: R (>= 3.5.0), methods
Imports: grDevices, stats, scales, Hmisc, RColorBrewer, dichromat,
        BiocGenerics, S4Vectors (>= 0.23.19), IRanges (>= 1.99.28),
        Seqinfo, GenomeInfoDb (>= 1.45.5), GenomicRanges (>= 1.61.1),
        SummarizedExperiment (>= 1.39.1), Biostrings (>= 2.77.2),
        Rsamtools (>= 2.25.1), GenomicAlignments (>= 1.45.1),
        GenomicFeatures (>= 1.61.4), AnnotationDbi, VariantAnnotation
        (>= 1.55.1), ensembldb (>= 2.33.1), AnnotationFilter (>=
        0.99.8), rlang
Suggests: BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer,
        EnsDb.Hsapiens.v75, RUnit
License: Artistic-2.0
LazyLoad: Yes
LazyData: Yes
Collate: utils.R color.R AllGenerics.R crunch-method.R mold-method.R
        addStepping-method.R getFragLength-method.R
        shrinkageFun-method.R maxGap-method.R spliceSummary-method.R
        ideogram.R pileup.R coverage.R labs.R original.R transform.R
        facets-method.R aes.R scale.R zzz.R biovizBase-package.R
biocViews: Infrastructure, Visualization, Preprocessing
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:09:04 UTC
RemoteUrl: https://github.com/bioc/biovizBase
RemoteRef: HEAD
RemoteSha: 7895cbf98b5dea8532dca8cd778616d1295f4a9b
NeedsCompilation: yes
Packaged: 2026-01-09 21:10:17 UTC; root
Author: Tengfei Yin [aut],
  Michael Lawrence [aut, ths, cre],
  Dianne Cook [aut, ths],
  Johannes Rainer [ctb]
Maintainer: Michael Lawrence <lawremi@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-01-09 21:14:56 UTC; windows
Archs: x64
