Analysis of SUrvival and RIsk prediction in patients based on
gene signatures
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Documentation for package ‘asuri’ version 0.99.19
Help Pages
| asuri | asuri: *A*nalysis of disease *SU*rvival and patient *RI*sk prediction based on gene signatures |
| ex_genePheno | ex_genePheno |
| ex_patientRisk | ex_patientRisk |
| ex_predictPatientRisk | ex_predictPatientRisk |
| ex_prefilterSAM | ex_prefilterSAM |
| genePheno | Identify Predictive Genes for a Phenotype |
| geneSurv | Kaplan-Meier Survival Analysis Based on Gene Expression or Risk Score |
| patientRisk | patientRisk |
| plotBetas | Plot the ordered beta values for patientRisk() |
| plotBoxplot | Plot a Boxplot for geneSurv() |
| plotKM | Plot the KM curves for geneSurv() and patientRisk() |
| plotLambda | Plot a lambda distribution for patientRisk() |
| plotLogRank | Plot the logrank p-value for each patient splitting for patientRisk() |
| plotProbClass | Plot a class probability distribution for geneSurv() |
| plotSigmoid | Plot the ordered risk distribution for patientRisk() |
| predict_PatientRisk | Predict Patient Risk Based on Gene Expression Data |
| predict_SurvCurve | Predict Survival Curve for a Test Patient Using Cox Model Predictions |
| prefilterSAM | Pre-filter Genes using SAM (Significance Analysis of Microarrays) |
| seBRCA | Example SummarizedExperiment object |