# Generated by roxygen2: do not edit by hand

export(genePheno)
export(geneSurv)
export(patientRisk)
export(plotBetas)
export(plotBoxplot)
export(plotKM)
export(plotLambda)
export(plotLogRank)
export(plotProbClass)
export(plotSigmoid)
export(predict_PatientRisk)
export(predict_SurvCurve)
export(prefilterSAM)
import(methods)
importFrom(ROCR,performance)
importFrom(ROCR,prediction)
importFrom(Rdpack,reprompt)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(ggplot2,aes)
importFrom(ggplot2,alpha)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_light)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(glmnet,cv.glmnet)
importFrom(grDevices,grey)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,grid)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,segments)
importFrom(graphics,strwidth)
importFrom(graphics,title)
importFrom(lubridate,seconds_to_period)
importFrom(scales,rescale)
importFrom(siggenes,d.stat)
importFrom(siggenes,findDelta)
importFrom(siggenes,list.siggenes)
importFrom(siggenes,sam)
importFrom(spsUtil,quiet)
importFrom(stats,approx)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pchisq)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,supsmu)
importFrom(stats,symnum)
importFrom(stats,wilcox.test)
importFrom(survcomp,concordance.index)
importFrom(survcomp,hazard.ratio)
importFrom(survival,coxph)
importFrom(survival,survdiff)
importFrom(survival,survfit)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
