MAplot                  Relative M vs. A plots
PLMset-class            Class PLMset
PLMset2exprSet          Convert a PLMset to an ExpressionSet
ReadRMAExpress          Read RMAExpress computed expression values
bg.correct.LESN         LESN - Low End Signal is Noise Background
                        corrections
fitPLM                  Fit a Probe Level Model to Affymetrix Genechip
                        Data.
normalize.AffyBatch.quantiles.probeset
                        Quantile Normalization applied to probesets
normalize.ExpressionSet.quantiles
                        Normalization applied to ExpressionSets
normalize.scaling       Scaling normalization
preprocess              Background correct and Normalize
pseudoColorBar          Coloring pseudo chip images
rmaPLM                  Fit a RMA to Affymetrix Genechip Data as a
                        PLMset
threestep               Three Step expression measures
threestepPLM            Three Step expression measures returned as a
                        PLMset
