Package: VarCon
Type: Package
Title: VarCon: an R package for retrieving neighboring nucleotides of
        an SNV
Version: 1.19.0
Description: VarCon is an R package which converts the positional
        information from the annotation of an single nucleotide
        variation (SNV) (either referring to the coding sequence or the
        reference genomic sequence). It retrieves the genomic reference
        sequence around the position of the single nucleotide
        variation. To asses, whether the SNV could potentially
        influence binding of splicing regulatory proteins VarCon
        calcualtes the HEXplorer score as an estimation. Besides,
        VarCon additionally reports splice site strengths of splice
        sites within the retrieved genomic sequence and any changes due
        to the SNV.
License: GPL-3
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Imports: methods, stats, IRanges, shiny, shinycssloaders, shinyFiles,
        ggplot2
Depends: Biostrings, BSgenome, GenomicRanges, R (>= 4.1)
Suggests: testthat, knitr, rmarkdown
biocViews: FunctionalGenomics, AlternativeSplicing
RoxygenNote: 7.1.1
Authors@R: person("Johannes", "Ptok", role = c("aut", "cre"), email = "Johannes.Ptok@posteo.de")
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:04:47 UTC
RemoteUrl: https://github.com/bioc/VarCon
RemoteRef: HEAD
RemoteSha: 479604cd9ae4d18644e5177e174ab8d203671ff7
NeedsCompilation: no
Packaged: 2025-11-16 07:20:08 UTC; root
Author: Johannes Ptok [aut, cre]
Maintainer: Johannes Ptok <Johannes.Ptok@posteo.de>
Built: R 4.6.0; ; 2025-11-16 07:22:39 UTC; windows
