Package: Uniquorn
Title: Identification of cancer cell lines based on their weighted
        mutational/ variational fingerprint
Version: 2.31.0
Authors@R: person("Raik", "Otto", email = "raik.otto@hu-berlin.de", role = c("aut", "cre"))
Description: 'Uniquorn' enables users to identify cancer cell lines.
        Cancer cell line misidentification and cross-contamination
        reprents a significant challenge for cancer researchers. The
        identification is vital and in the frame of this package based
        on the locations/ loci of somatic and germline mutations/
        variations. The input format is vcf/ vcf.gz and the files have
        to contain a single cancer cell line sample (i.e. a single
        member/genotype/gt column in the vcf file).
Imports: stringr, R.utils, WriteXLS, stats, doParallel, foreach,
        GenomicRanges, IRanges, VariantAnnotation, data.table
Depends: R (>= 3.5)
License: Artistic-2.0
Type: Package
Date: 2025-10-22
Author: Raik Otto
RoxygenNote: 7.2.3
NeedsCompilation: no
Suggests: testthat, knitr, rmarkdown, BiocGenerics
biocViews: ImmunoOncology, StatisticalMethod, WholeGenome, ExomeSeq
VignetteBuilder: knitr
Encoding: UTF-8
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev perl xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:30:32 UTC
RemoteUrl: https://github.com/bioc/Uniquorn
RemoteRef: HEAD
RemoteSha: baa8db3a6665076ae0afa1b774119b9c0c0db653
Packaged: 2025-10-30 14:33:55 UTC; root
Maintainer: Raik Otto <raik.otto@hu-berlin.de>
Built: R 4.6.0; ; 2025-10-30 14:37:23 UTC; windows
