Package: Ularcirc
Type: Package
Title: Shiny app for canonical and back splicing analysis (i.e.
        circular and mRNA analysis)
Version: 1.29.0
Authors@R: person ("David", "Humphreys", email="d.humphreys@victorchang.edu.au", 
      role = c("aut","cre"))
Description: Ularcirc reads in STAR aligned splice junction files and
        provides visualisation and analysis tools for splicing
        analysis. Users can assess backsplice junctions and forward
        canonical junctions.
biocViews: DataRepresentation,Visualization, Genetics, Sequencing,
        Annotation, Coverage, AlternativeSplicing, DifferentialSplicing
License: file LICENSE
Encoding: UTF-8
Depends: R (>= 3.4.0)
Imports: AnnotationHub, AnnotationDbi, BiocGenerics, Biostrings,
        BSgenome, data.table (>= 1.9.4), DT, GenomicFeatures,
        GenomeInfoDb, GenomeInfoDbData, GenomicAlignments,
        GenomicRanges, ggplot2, ggrepel, gsubfn, moments,
        Organism.dplyr, plotgardener,R.utils, S4Vectors, shiny,
        shinydashboard, shinyFiles, shinyjs, yaml
RoxygenNote: 7.3.2
Suggests: BSgenome.Hsapiens.UCSC.hg38, BiocStyle, httpuv, knitr,
        org.Hs.eg.db, rmarkdown, TxDb.Hsapiens.UCSC.hg38.knownGene
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:45:47 UTC
RemoteUrl: https://github.com/bioc/Ularcirc
RemoteRef: HEAD
RemoteSha: ff1d0ee9a5e15f3eab3a7aa61406df7ab33f056b
NeedsCompilation: no
Packaged: 2025-11-23 16:40:26 UTC; root
Author: David Humphreys [aut, cre]
Maintainer: David Humphreys <d.humphreys@victorchang.edu.au>
Built: R 4.6.0; ; 2025-11-23 16:43:20 UTC; windows
