Package: SBGNview
Title: "SBGNview: Data Analysis, Integration and Visualization on SBGN
        Pathways"
Description: SBGNview is a tool set for pathway based data
        visalization, integration and analysis. SBGNview is similar and
        complementary to the widely used Pathview, with the following
        key features: 1. Pathway definition by the widely adopted
        Systems Biology Graphical Notation (SBGN); 2. Supports multiple
        major pathway databases beyond KEGG (Reactome, MetaCyc, SMPDB,
        PANTHER, METACROP) and user defined pathways; 3. Covers 5,200
        reference pathways and over 3,000 species by default; 4.
        Extensive graphics controls, including glyph and edge
        attributes, graph layout and sub-pathway highlight; 5. SBGN
        pathway data manipulation, processing, extraction and analysis.
Version: 1.25.0
Author: Xiaoxi Dong*, Kovidh Vegesna*, Weijun Luo
Maintainer: Weijun Luo <luo_weijun@yahoo.com>
Depends: R (>= 3.6), pathview, SBGNview.data
Imports: Rdpack, grDevices, methods, stats, utils, xml2, rsvg, igraph,
        rmarkdown, knitr, SummarizedExperiment, AnnotationDbi, httr,
        KEGGREST, bookdown
RdMacros: Rdpack
License: AGPL-3
LazyData: FALSE
Collate: SBGN.to.SVG.R SBGNview.R SBGNview.obj.fun.R color.panel.R
        data.R download.utilities.R highlight.utilities.R
        mapping.utilities.R parsing.utilities.R plot.utilities.R zzz.R
RoxygenNote: 7.1.1
Suggests: testthat, gage
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: GeneTarget, Pathways, GraphAndNetwork, Visualization,
        GeneSetEnrichment, DifferentialExpression, GeneExpression,
        Microarray, RNASeq, Genetics, Metabolomics, Proteomics,
        SystemsBiology, Sequencing, GeneTarget
URL: https://github.com/datapplab/SBGNview
BugReports: https://github.com/datapplab/SBGNview/issues
Config/pak/sysreqs: libglpk-dev make libpng-dev librsvg2-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:52:54 UTC
RemoteUrl: https://github.com/bioc/SBGNview
RemoteRef: HEAD
RemoteSha: 146fd47aef8d37eb8f628b4f87dba8f2ab00869e
NeedsCompilation: no
Packaged: 2025-10-30 10:29:16 UTC; root
Built: R 4.6.0; ; 2025-10-30 10:32:00 UTC; windows
