# Generated by roxygen2: do not edit by hand

S3method(plot,RCM)
export(RCM)
export(RCM_NB)
export(addOrthProjection)
export(buildConfMat)
export(checkAlias)
export(extractCoord)
export(getDevianceRes)
export(inertia)
export(liks)
export(permanova)
export(plotRespFun)
export(residualPlot)
exportMethods(RCM)
import(ggplot2)
import(methods)
import(phyloseq)
importFrom(MASS,negative.binomial)
importFrom(RColorBrewer,brewer.pal)
importFrom(VGAM,coef)
importFrom(VGAM,negbinomial.size)
importFrom(VGAM,predict)
importFrom(VGAM,s)
importFrom(VGAM,vgam)
importFrom(alabama,constrOptim.nl)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(graphics,par)
importFrom(graphics,text)
importFrom(nleqslv,nleqslv)
importFrom(phyloseq,get_variable)
importFrom(stats,alias)
importFrom(stats,as.formula)
importFrom(stats,contrasts)
importFrom(stats,dist)
importFrom(stats,dnbinom)
importFrom(stats,dpois)
importFrom(stats,formula)
importFrom(stats,glm)
importFrom(stats,integrate)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,weighted.mean)
importFrom(tensor,tensor)
importFrom(tseries,runs.test)
