Package: QRscore
Title: Quantile Rank Score
Version: 1.3.0
Date: 2025-03-28
Authors@R: c(
    person("Fanding", "Zhou", email = "zhoufd@berkeley.edu", role = c("cre","aut"),
    comment = c(ORCID = "0000-0003-1306-740X")),
    person("Alan", "Aw", email = "nalawanij@gmail.com", role = c("aut"), 
    comment = c(ORCID = "0000-0001-9455-7878")), 
    person("Dan", "Erdmann-Pham", email = "erdpham@stanford.edu", role = "aut"),
    person("Jonathan", "Fischer", email = "jfischer1@ufl.edu", role = "aut", 
    comment = c(ORCID = "0000-0002-1165-9930")),
    person("Xurui", "Chen", email = "xuruichen@berkeley.edu", role = "ctb")
    )
Description: In genomics, differential analysis enables the discovery
        of groups of genes implicating important biological processes
        such as cell differentiation and aging. Non-parametric tests of
        differential gene expression usually detect shifts in
        centrality (such as mean or median), and therefore suffer from
        diminished power against alternative hypotheses characterized
        by shifts in spread (such as variance). This package provides a
        flexible family of non-parametric two-sample tests and K-sample
        tests, which is based on theoretical work around non-parametric
        tests, spacing statistics and local asymptotic normality
        (Erdmann-Pham et al., 2022+ [arXiv:2008.06664v2]; Erdmann-Pham,
        2023+ [arXiv:2209.14235v2]).
License: GPL (>= 3)
Depends: R (>= 4.4.0)
Imports: MASS, pscl, arrangements, hitandrun, assertthat, dplyr,
        BiocParallel
Suggests: devtools, DESeq2, knitr, rmarkdown, testthat, BiocStyle
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-10-30 08:37:10 UTC; root
VignetteBuilder: BiocStyle
URL: https://github.com/songlab-cal/QRscore
BugReports: https://github.com/songlab-cal/QRscore/issues
biocViews: StatisticalMethod, DifferentialExpression, GeneExpression,
        StructuralGenomics, GeneTarget
Config/pak/sysreqs: libgmp3-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:36:23 UTC
RemoteUrl: https://github.com/bioc/QRscore
RemoteRef: HEAD
RemoteSha: 57bfb3dac906652b93f97c18fe0c43d7f28804f3
Author: Fanding Zhou [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-1306-740X>),
  Alan Aw [aut] (ORCID: <https://orcid.org/0000-0001-9455-7878>),
  Dan Erdmann-Pham [aut],
  Jonathan Fischer [aut] (ORCID: <https://orcid.org/0000-0002-1165-9930>),
  Xurui Chen [ctb]
Maintainer: Fanding Zhou <zhoufd@berkeley.edu>
Built: R 4.6.0; ; 2025-10-30 08:39:14 UTC; windows
