# Generated by roxygen2: do not edit by hand

export(autoClusterMapper)
export(checkNetEntropy)
export(checkScaleFreeModel)
export(dfToDistance)
export(dfToProjection)
export(getClusters)
export(getComp)
export(getDfMapper)
export(getDistMat)
export(getGraph)
export(getJacc)
export(getMetrics)
export(getNodeDataMat)
export(getOrigData)
export(getOutcome)
export(getOutcomeFact)
export(getScaledData)
export(jaccardMatrix)
export(makeTDAobj)
export(makeTDAobjFromSE)
export(mapperCore)
export(predict_mapper_class)
export(setComp)
export(setDfMapper)
export(setDistMat)
export(setGraph)
export(setJacc)
export(setNodeDataMat)
export(setOrigData)
export(setOutcome)
export(setOutcomeFact)
export(setScaledData)
export(tdaDfEnrichment)
exportClasses(TDAobj)
exportMethods(getClusters)
exportMethods(getComp)
exportMethods(getDfMapper)
exportMethods(getDistMat)
exportMethods(getGraph)
exportMethods(getJacc)
exportMethods(getMetrics)
exportMethods(getNodeDataMat)
exportMethods(getOrigData)
exportMethods(getOutcome)
exportMethods(getOutcomeFact)
exportMethods(getScaledData)
exportMethods(setComp)
exportMethods(setDfMapper)
exportMethods(setDistMat)
exportMethods(setGraph)
exportMethods(setJacc)
exportMethods(setNodeDataMat)
exportMethods(setOrigData)
exportMethods(setOutcome)
exportMethods(setOutcomeFact)
exportMethods(setScaledData)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(cluster,daisy)
importFrom(dbscan,dbscan)
importFrom(dbscan,extractDBSCAN)
importFrom(dbscan,kNNdist)
importFrom(dbscan,optics)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotation_logticks)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,stat_smooth)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(grDevices,rainbow)
importFrom(igraph,V)
importFrom(igraph,as.undirected)
importFrom(igraph,assortativity_degree)
importFrom(igraph,average.path.length)
importFrom(igraph,cluster_edge_betweenness)
importFrom(igraph,cluster_fast_greedy)
importFrom(igraph,cluster_label_prop)
importFrom(igraph,cluster_optimal)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,components)
importFrom(igraph,degree)
importFrom(igraph,degree_distribution)
importFrom(igraph,ecount)
importFrom(igraph,fit_power_law)
importFrom(igraph,gorder)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,induced_subgraph)
importFrom(igraph,is_directed)
importFrom(igraph,is_igraph)
importFrom(igraph,membership)
importFrom(igraph,modularity)
importFrom(igraph,simplify)
importFrom(igraph,transitivity)
importFrom(igraph,vcount)
importFrom(kernlab,kpca)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(stats,approx)
importFrom(stats,as.dist)
importFrom(stats,cmdscale)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,prcomp)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(tsne,tsne)
importFrom(umap,umap)
importFrom(umap,umap.defaults)
importFrom(utils,head)
importFrom(vegan,isomap)
