3a94e27b48ef91a096aca728e41e584d *CITATION
494a9fe732782cbc064651044e04723f *DESCRIPTION
8923d4eadc54faff60ed51a96f140794 *INDEX
faccfdc6a7e66a81572e1ebe45d68a5e *LICENSE
35e2a45d73a3dc6d2202f84a0eafa618 *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
ae817469a48db0a3d8b9ed31b06c2ec2 *Meta/hsearch.rds
2c73c7bcba94a7cd5cf3ecf81787232f *Meta/links.rds
94e34a4992878a8ab597740268934bc8 *Meta/nsInfo.rds
d1fa4759b81d3837227e9125f6f9a511 *Meta/package.rds
1e4ccc1256c9f59c41ccc43662ba57e1 *Meta/vignette.rds
9d1596c4ecb74f6e82bad5919d578475 *NAMESPACE
ed95998103c1f15eb33bec8675b89832 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/MutationalPatterns
0dc4694000cc2bd136bd75f24ab768d9 *R/MutationalPatterns.rdb
a34e0a064287b8b14141fae51ddd817a *R/MutationalPatterns.rdx
0b8aced64ab1963957e470f2c01314a9 *README.md
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6569cdefe5d8a150afeffdfc65820984 *doc/Introduction_to_MutationalPatterns.Rmd
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33862fe8a7ae0eddf4c445c769ed84b5 *doc/index.html
7c8f99f154f53b8a8318684ebc679756 *extdata/ReplicationDirectionRegions.bed
643092cb274fce36504f839500210821 *extdata/blood-AC.vcf
fc7938084ce8fbe9847d01bf118aa490 *extdata/blood-ACC55.vcf
150473517ba18e3aaf399c9b180c960b *extdata/blood-BCH.vcf
d6d71a1d57a8942bd8542068ad488c8e *extdata/callableloci-sample.bed
b49e7fa31aa68b0aee3c0ec7dd3ef042 *extdata/colon1-sample.vcf
a2bfb21690d86ad4e607cd119854f3bc *extdata/colon2-sample.vcf
95a608fddd72b1765036f927ad30e387 *extdata/colon3-sample.vcf
1a050f99f58a0afc3a17158fde0e5b42 *extdata/duplicate.vcf
2c705176f6bd12f64c1fd67328140944 *extdata/empty.vcf
4d5f87f30ee9816399fe2a13de456c6e *extdata/intestine1-sample.vcf
d15ed6a7324874597fa541b74b8e4fde *extdata/intestine2-sample.vcf
3d94d229781d592ff4596da5634adf9a *extdata/intestine3-sample.vcf
39f063623d16503183ee9dffee66e616 *extdata/liver1-sample.vcf
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2a1f82ea11ac948eb739611bd45f8705 *extdata/liver3-sample.vcf
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a184291fa592ded29fb6afddc2ef988f *extdata/signatures/dbs_COSMIC_v3.1_reference.txt
f962bbf63297d6a6da44c464224d4f85 *extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh37.txt
8c59a0a3adc0a8780aa87911b59c3f59 *extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh38.txt
3c7bdead32cf4a245c0a2aa974f054d0 *extdata/signatures/dbs_COSMIC_v3.2_reference_mm10.txt
5e052965ee25f874cd1c9082ed37e694 *extdata/signatures/dbs_SIGNAL_exposure.txt
71fcffe1378db7d61ae8e23d1d670cbb *extdata/signatures/indel_COSMIC_v3.1_reference.txt
eec0300b238112055b8296d900790766 *extdata/signatures/indel_COSMIC_v3.2_reference_GRCh37.txt
9e868e8eb41b0d2545ed168d034ba9c9 *extdata/signatures/snv_COSMIC_v3.1_reference.txt
7aa849f8c84eb4c954caa1fa952c4f2c *extdata/signatures/snv_COSMIC_v3.2_reference_GRCh37.txt
3ad8e301d492818d50fe78cc7efd066d *extdata/signatures/snv_COSMIC_v3.2_reference_GRCh38.txt
3d1163b13da4633a8e89068f4ca5d28f *extdata/signatures/snv_COSMIC_v3.2_reference_mm10.txt
5ad31ce61e64b1ab1098f7d05130fc52 *extdata/signatures/snv_SIGNAL_exposure.txt
9ee9b09a6d6feb0fc153f30863ab9466 *extdata/signatures/snv_SIGNAL_reference.txt
fe868420f878f439498981e8e039ce10 *extdata/signatures/snv_SIGNAL_tissue.txt
fe9e67dbb125a7400885ec628cf9328a *extdata/signatures/snv_SPARSE_reference.txt
8048639b0d0fbc89dbee8b06dccbd560 *extdata/signatures/tsb_snv_COSMIC_v3.1_reference.txt
91477419453b74175246f0b75f3e5f08 *help/AnIndex
01c854ccd33f58f0b0bc1e642e8f96ab *help/MutationalPatterns.rdb
d37adde1a477fcb39dbb70462a8386a7 *help/MutationalPatterns.rdx
8d09ebaf16ce78bb6388af786e095500 *help/aliases.rds
a7dd956001e6a4f24369709f518e99f8 *help/paths.rds
297d7998fe6253fd3af49ea31cc93540 *html/00Index.html
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403c69dfa78265ce3243a98014517e43 *scripts/Format_signatures.R
d2d6c11b0390efcc8ce234fc87d4875e *scripts/create_example_dbs.R
6673fa4acea44331de0fec3bce32fec4 *scripts/create_example_indels.R
a45390662576f0de8ecc64eed8788ed0 *scripts/create_example_mbs.R
99ae1839a18e69d389a3733a6527e800 *scripts/create_example_regulatory_regions.R
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50aef9aef66a8d4feffa67219c6bb22a *states/CTCF_g_data.rds
d6b322652e615904701ef72e4c44459c *states/blood_dbs_counts.rds
d2aba5cdae0153f8f2bd6ebd50b08326 *states/blood_grl.rds
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59546af00545739c85bb48ce29ecceb6 *states/blood_grl_mbs.rds
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184ec97c6480f951678512f6cabd1aed *states/blosum62.rds
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2eb1b99f55ea1995ce95b21408ab7eaf *states/distr_data.rds
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9d5ac4c45b8f597e8a8910cf8f7a08e1 *states/mut_mat_data_extended.rds
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a722830dde4d647868b52f92dc4f5208 *states/mut_mat_repli.rds
24f3c49d599db518c5c4ef926c6a383e *states/mut_mat_s_data.rds
078f2c50a6ed1dfd7d8455549919173f *states/mut_mat_splitregions.rds
84527f56cc8efd5e749947aa2cb37bb4 *states/nmf_res_data.rds
ba6921b8d3702ccf19a234ed3d860ac3 *states/nmf_res_strand_data.rds
55d9b55591e9d90ec22cb27fa2ef35f3 *states/promoter_flanking_g_data.rds
2dd1fd95ca70f059ab980864726f3cfa *states/promoter_g_data.rds
ada3717b99be495b104045ec6f9ab641 *states/read_vcfs_as_granges_output.rds
a87640b8af9ff1f8de3ec6aca1d29455 *states/regional_sims.rds
363ba368ff0bafd6054066a1a992f1f3 *states/regulatory_data.rds
2e74e072a8d0a2040d56f60cae98ef4d *states/repli_strand.rds
0751885efc7fd67e2095d98e6fbca8a3 *states/snv_refit.rds
dc473c15476f28e0bd4934e249a2030a *states/strict_best_snv_refit.rds
1cb70f76a2a43bd4c0f9b6414ee11690 *states/strict_snv_refit.rds
