Package: MBECS
Title: Evaluation and correction of batch effects in microbiome
        data-sets
Version: 1.15.0
Authors@R: 
    person(given = "Michael",
       family = "Olbrich",
       role = c("aut", "cre"),
       email = "M.Olbrich@protonmail.com",
       comment = c(ORCID = "0000-0003-2789-3382"))
Description: The Microbiome Batch Effect Correction Suite (MBECS)
        provides a set of functions to evaluate and mitigate unwated
        noise due to processing in batches. To that end it incorporates
        a host of batch correcting algorithms (BECA) from various
        packages. In addition it offers a correction and reporting
        pipeline that provides a preliminary look at the
        characteristics of a data-set before and after correcting for
        batch effects.
biocViews: BatchEffect, Microbiome, ReportWriting, Visualization,
        Normalization, QualityControl
URL: https://github.com/rmolbrich/MBECS
BugReports: https://github.com/rmolbrich/MBECS/issues/new
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.3
Imports: methods, magrittr, phyloseq, limma, lme4, lmerTest, pheatmap,
        rmarkdown, cluster, dplyr, ggplot2, gridExtra, ruv, sva,
        tibble, tidyr, vegan, stats, utils, Matrix
Suggests: knitr, markdown, BiocStyle, testthat (>= 3.0.0)
Depends: R (>= 4.1)
Collate: 'MBECS-package.R' 'data.R' 'mbecs_classes.R'
        'mbecs_analyses.R' 'mbecs_corrections.R' 'mbecs_helper.R'
        'mbecs_plots.R' 'mbecs_reports.R'
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:15:19 UTC
RemoteUrl: https://github.com/bioc/MBECS
RemoteRef: HEAD
RemoteSha: 796859eb552444a9ba31b0d90a4f97a7edecdba4
NeedsCompilation: no
Packaged: 2025-11-02 15:04:58 UTC; root
Author: Michael Olbrich [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2789-3382>)
Maintainer: Michael Olbrich <M.Olbrich@protonmail.com>
Built: R 4.6.0; ; 2025-11-02 15:07:48 UTC; windows
