# Differential gene usage in immune repertoires

## Documentation for package ‘IgGeneUsage’ version 1.25.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

IgGeneUsage-package | The R package IgGeneUsage
CDR3_Epitopes | Net charge usage in CDR3 sequences of T-cell receptor repertoires disturbed by Influenza-A and CMV
DGU | Differential immunoglobulin (Ig) gene usage in immune repertoires
d_zibb_1 | Simulated Ig gene usage data
d_zibb_2 | Simulated Ig gene usage data
d_zibb_3 | Simulated Ig gene usage data
d_zibb_4 | Simulated Ig gene usage data
d_zibb_5 | Simulated Ig gene usage data
d_zibb_6 | Simulated Ig gene usage data
Ig | IGHV gene family usage in vaccine-challenged B-cell repertoires
IgGeneUsage | The R package IgGeneUsage
IGHV_HCV | IGHV gene usage in HCV+ and healthy individuals
Ig_SE | IGHV gene family usage in vaccine-challenged B-cell repertoires (SummarizedExperiment object)
LOO | Leave-one-out analysis for quantitative evaluation of the probability of DGU