Package: HIPPO
Type: Package
Title: Heterogeneity-Induced Pre-Processing tOol
Version: 1.23.0
Authors@R: c(
  person(given = 'Tae', family = 'Kim', email = 'tk382@uchicago.edu', role = c('aut', 'cre')),
  person(given = 'Mengjie', family = 'Chen', email = 'mengjiechen@uchicago.edu', role = 'aut')
  )
Description: For scRNA-seq data, it selects features and clusters the
        cells simultaneously for single-cell UMI data. It has a novel
        feature selection method using the zero inflation instead of
        gene variance, and computationally faster than other existing
        methods since it only relies on PCA+Kmeans rather than
        graph-clustering or consensus clustering.
License: GPL (>=2)
Depends: R (>= 3.6.0)
Encoding: UTF-8
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/tk382/HIPPO
BugReports: https://github.com/tk382/HIPPO/issues
Imports: ggplot2, graphics, stats, reshape2, gridExtra, Rtsne, umap,
        dplyr, rlang, magrittr, irlba, Matrix, SingleCellExperiment,
        ggrepel
RoxygenNote: 7.1.0
biocViews: Sequencing, SingleCell, GeneExpression,
        DifferentialExpression, Clustering
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:57:56 UTC
RemoteUrl: https://github.com/bioc/HIPPO
RemoteRef: HEAD
RemoteSha: dd797d460768f724eaafd0df30ef4a559261c739
NeedsCompilation: no
Packaged: 2025-10-30 06:36:41 UTC; root
Author: Tae Kim [aut, cre],
  Mengjie Chen [aut]
Maintainer: Tae Kim <tk382@uchicago.edu>
Built: R 4.6.0; ; 2025-10-30 06:38:57 UTC; windows
