Package: HERON
Type: Package
Date: 2024-08-22
Title: Hierarchical Epitope pROtein biNding
Version: 1.9.0
Authors@R: c(
    person(given="Sean",
           family = "McIlwain",
           role = c("aut", "cre"),
           email = "sean.mcilwain@wisc.edu",
           comment = c(ORCID="0000-0002-3820-8400")),
    person(given="Irene",
        family = "Ong",
        role = c("aut"),
        email = "irene.ong@wisc.edu",
        comment = c(ORCID="0000-0002-9353-6941"))
    )
Description: HERON is a software package for analyzing peptide binding
        array data. In addition to identifying significant binding
        probes, HERON also provides functions for finding epitopes
        (string of consecutive peptides within a protein). HERON also
        calculates significance on the probe, epitope, and protein
        level by employing meta p-value methods.  HERON is designed for
        obtaining calls on the sample level and calculates fractions of
        hits for different conditions.
License: GPL (>= 3)
URL: https://github.com/Ong-Research/HERON
BugReports: https://github.com/Ong-Research/HERON/issues
Encoding: UTF-8
LazyData: false
Imports: matrixStats, stats, data.table, harmonicmeanp, metap, cluster,
        spdep, Matrix, limma, methods
RoxygenNote: 7.3.1
biocViews: Microarray, Software
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Depends: R (>= 4.4.0), SummarizedExperiment (>= 1.1.6), GenomicRanges,
        IRanges, S4Vectors
Config/pak/sysreqs: libabsl-dev cmake libfftw3-dev libgdal-dev gdal-bin
        libgeos-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:24:33 UTC
RemoteUrl: https://github.com/bioc/HERON
RemoteRef: HEAD
RemoteSha: 4b636359b5634430f533c84236e4bf7f8441ce89
NeedsCompilation: no
Packaged: 2025-11-02 14:59:40 UTC; root
Author: Sean McIlwain [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3820-8400>),
  Irene Ong [aut] (ORCID: <https://orcid.org/0000-0002-9353-6941>)
Maintainer: Sean McIlwain <sean.mcilwain@wisc.edu>
Built: R 4.6.0; ; 2025-11-02 15:01:36 UTC; windows
