AlvMac                  Sample data from a RNAseq experiment.
AlvMac_GOgenes          Example of custom mapping between gene ontology
                        identifiers and gene features.
AlvMac_allGO            Example of custom gene ontology annotations.
AlvMac_allgenes         Example of custom gene feature annotations.
AlvMac_results          Sample output from the 'GO_analyse()' function
                        on an RNAseq experiment.
AlvMac_results.pVal     Sample output from the 'pValue_GO()' function
                        on an RNAseq experiment.
GO_analyse              Identifies gene ontologies clustering samples
                        according to predefined factor.
GOexpress-package       Visualise microarray and RNAseq data with gene
                        ontology annotations.
cluster_GO              Generates a hierarchical clustering of the
                        samples
expression_plot         Plots the expression profile of a gene by
                        levels of a factor
expression_plot_symbol
                        Plots the expression profile of a gene by
                        levels of a factor
expression_profiles     Plots the individual expression profile of a
                        gene in samples series
expression_profiles_symbol
                        Plots the individual expression profile of a
                        gene in samples series
heatmap_GO              Generates a heatmap and hierarchical clustering
                        of the samples and the genes
hist_scores             Plots the distribution of scores following an
                        GOexpress analysis.
list_genes              Returns the genes associated with a Gene
                        Ontology
microarray2dataset      Table mapping probeset identifier prefixes to
                        datasets in the Ensembl BioMart.
pValue_GO               Compute p-values for ontologies by randomising
                        gene labels.
plot_design             Plot Univariate Effects for genes associated
                        with a Gene Ontology
prefix2dataset          Table mapping Ensembl gene identifier prefixes
                        to BioMart datasets.
quantiles_scores        Returns the quantiles of scores following an
                        GOexpress analysis.
rerank                  Reorder the result variable by alternative
                        metrics.
subEset                 Subset an ExpressionSet to values of phenotypic
                        data columns.
subset_scores           Returns a filtered list from GO_analyse
                        results.
table_genes             Returns a table listing the genes associated
                        with a given Gene Ontology
