Package: DiscoRhythm
Title: Interactive Workflow for Discovering Rhythmicity in Biological
        Data
Version: 1.27.0
Authors@R: c(
    person("Matthew", "Carlucci",
    email = "Matthew.Carlucci@camh.ca",
    role = c("aut", "cre")),
    person("Algimantas", "Kriščiūnas",
    email = "algimantas.krisciunas@gmc.vu.lt",
    role = c("aut")),
    person("Haohan", "Li",
    email = "Xavier.li@edu.uwaterloo.ca",
    role = c("aut")),
    person("Povilas", "Gibas",
    email = "povilas.gibas@bti.vu.lt",
    role = c("aut")),
    person("Karolis", "Koncevičius",
    email = "karolis.koncevicius@gmc.vu.lt",
    role = c("aut")),
    person("Art", "Petronis",
    email = "Art.Petronis@camh.ca",
    role = c("aut")),
    person("Gabriel", "Oh",
    email = "Gabriel.Oh@camh.ca",
    role = c("aut"))
    )
Description: Set of functions for estimation of cyclical
        characteristics, such as period, phase, amplitude, and
        statistical significance in large temporal datasets. Supporting
        functions are available for quality control, dimensionality
        reduction, spectral analysis, and analysis of experimental
        replicates. Contains a R Shiny web interface to execute all
        workflow steps.
Depends: R (>= 3.6.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Imports: matrixTests, matrixStats, MetaCycle (>= 1.2.0), data.table,
        ggplot2, ggExtra, dplyr, broom, shiny, shinyBS,
        shinycssloaders, shinydashboard, shinyjs, BiocStyle, rmarkdown,
        knitr, kableExtra, magick, VennDiagram, UpSetR, heatmaply,
        viridis, plotly, DT, gridExtra, methods, stats,
        SummarizedExperiment, BiocGenerics, S4Vectors, zip, reshape2
Suggests: testthat
SystemRequirements: To generate html reports pandoc
        (http://pandoc.org/installing.html) is required.
biocViews: Software, TimeCourse, QualityControl, Visualization, GUI,
        PrincipalComponent
URL: https://github.com/matthewcarlucci/DiscoRhythm
BugReports: https://github.com/matthewcarlucci/DiscoRhythm/issues
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        make libharfbuzz-dev libmagick++-dev gsfonts libicu-dev
        libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:51:20 UTC
RemoteUrl: https://github.com/bioc/DiscoRhythm
RemoteRef: HEAD
RemoteSha: 15d7b6072ca426eaa955844c7e9e80503ac3fba7
NeedsCompilation: no
Packaged: 2025-11-02 14:50:04 UTC; root
Author: Matthew Carlucci [aut, cre],
  Algimantas Kriščiūnas [aut],
  Haohan Li [aut],
  Povilas Gibas [aut],
  Karolis Koncevičius [aut],
  Art Petronis [aut],
  Gabriel Oh [aut]
Maintainer: Matthew Carlucci <Matthew.Carlucci@camh.ca>
Built: R 4.6.0; ; 2025-11-02 14:51:52 UTC; windows
