Package: ClusterFoldSimilarity
Type: Package
Title: Calculate similarity of clusters from different single cell
        samples using foldchanges
Version: 1.7.1
Authors@R: person("Oscar", "Gonzalez-Velasco",
  email = "oscargvelasco@gmail.com",
  role = c("cre", "aut"),
  comment = c(ORCID = "0000-0002-5054-8635"))
Description: This package calculates a similarity coefficient using the
        fold changes of shared features (e.g. genes) among clusters of
        different samples/batches/datasets. The similarity coefficient
        is calculated using the dot-product (Hadamard product) of every
        pairwise combination of Fold Changes between a source cluster i
        of sample/dataset n and all the target clusters j in
        sample/dataset m
License: Artistic-2.0
Encoding: UTF-8
Imports: methods, igraph, ggplot2, scales, BiocParallel, graphics,
        stats, utils, Matrix, cowplot, dplyr, reshape2, Seurat,
        SeuratObject, SingleCellExperiment, ggdendro
Suggests: knitr, rmarkdown, kableExtra, scRNAseq, BiocStyle
RoxygenNote: 7.2.3
biocViews: SingleCell, Clustering, FeatureExtraction, GraphAndNetwork,
        GeneTarget, RNASeq
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev make libicu-dev libpng-dev libxml2-dev
        libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-02-02 10:40:56 UTC
RemoteUrl: https://github.com/bioc/ClusterFoldSimilarity
RemoteRef: HEAD
RemoteSha: 166657020848d32e6117f15e9376de5ebfaa23bb
NeedsCompilation: no
Packaged: 2026-02-03 04:23:54 UTC; root
Author: Oscar Gonzalez-Velasco [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-5054-8635>)
Maintainer: Oscar Gonzalez-Velasco <oscargvelasco@gmail.com>
Built: R 4.6.0; ; 2026-02-03 04:26:35 UTC; windows
