Package: ChIPexoQual
Type: Package
Title: ChIPexoQual
Version: 1.35.0
Author: Rene Welch, Dongjun Chung, Sunduz Keles
Maintainer: Rene Welch <welch@stat.wisc.edu>
Authors@R: c(person(given = "Dongjun", family = "Chung", role = "aut"),
        person(given = "Sunduz",family = "Keles",role = "aut"),
        person(given = "Rene", family = "Welch", role = c("aut",
        "cre"), email = "[welch@stat.wisc.edu]"))
Description: Package with a quality control pipeline for ChIP-exo/nexus
        data.
URL: https:github.com/keleslab/ChIPexoQual
BugReports: https://github.com/welch16/ChIPexoQual/issues
License: GPL (>=2)
Depends: R (>= 3.5.0), GenomicAlignments (>= 1.45.1)
Imports: methods, utils, Seqinfo, stats, BiocParallel, GenomicRanges
        (>= 1.61.1), ggplot2 (>= 1.0), data.table (>= 1.9.6), Rsamtools
        (>= 2.25.1), IRanges (>= 1.6), S4Vectors (>= 0.8), biovizBase
        (>= 1.18), broom (>= 0.4), RColorBrewer (>= 1.1), dplyr (>=
        0.5), scales (>= 0.4.0), viridis (>= 0.3), hexbin (>= 1.27),
        rmarkdown
Suggests: ChIPexoQualExample (>= 0.99.1), knitr (>= 1.10), BiocStyle,
        gridExtra (>= 2.2), testthat
VignetteBuilder: knitr
biocViews: ChIPSeq, Sequencing, Transcription, Visualization,
        QualityControl, Coverage, Alignment
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:36:27 UTC
RemoteUrl: https://github.com/bioc/ChIPexoQual
RemoteRef: HEAD
RemoteSha: c1a42addef5cb95137ba3e5b17ff0bcf6bb902ae
NeedsCompilation: no
Packaged: 2025-10-30 04:33:03 UTC; root
Built: R 4.6.0; ; 2025-10-30 04:35:48 UTC; windows
