ARCvURCplot             ARCvURCplot
ExoData-class           ExoData object and constructors
ExoDataBlacklist        ExoDataBlacklist
ExoDataSubsampling      ExoDataSubsampling
FSRDistplot             FSRDistplot
MAplot                  MAplot
beta1                   beta1 methods
beta2                   beta2 methods
blacklists              'list' of 'GRanges' objects with the blacklists
                        generated by the ENCODE and modENCODE projects.
calculateParamDist      calculateParamDist 'calculateParamDist'
                        calculates the quality parameters of one
                        iteration. This function samples 'nregions'
                        rows from the stat matrix and fits the linear
                        model 'lm(d ~ 0 + u + w)'
exoExample              'ExoData' results for FoxA1 ChIP-exo experiment
formatRegions           formatRegions 'formatRegions' separates the
                        width, depth and uniquePos summary statistics
                        from the 'ExoData' object to calculate the
                        quality parameters/
nreads                  nreads methods
paramDist               paramDist methods
paramDistBoxplot        paramDistBoxplot
regionCompplot          regionCompplot
