Package: BANDITS
Type: Package
Title: BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Version: 1.27.0
Author: Simone Tiberi [aut, cre].
Maintainer: Simone Tiberi <simone.tiberi@unibo.it>
Description: BANDITS is a Bayesian hierarchical model for detecting
        differential splicing of genes and transcripts, via
        differential transcript usage (DTU), between two or more
        conditions. The method uses a Bayesian hierarchical framework,
        which allows for sample specific proportions in a
        Dirichlet-Multinomial model, and samples the allocation of
        fragments to the transcripts. Parameters are inferred via
        Markov chain Monte Carlo (MCMC) techniques and a DTU test is
        performed via a multivariate Wald test on the posterior
        densities for the average relative abundance of transcripts.
biocViews: DifferentialSplicing, AlternativeSplicing, Bayesian,
        Genetics, RNASeq, Sequencing, DifferentialExpression,
        GeneExpression, MultipleComparison, Software, Transcription,
        StatisticalMethod, Visualization
License: GPL (>= 3)
Depends: R (>= 4.3.0)
Imports: Rcpp, doRNG, MASS, data.table, R.utils, doParallel, parallel,
        foreach, methods, stats, graphics, ggplot2, DRIMSeq,
        BiocParallel
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, tximport, BiocStyle,
        GenomicFeatures, Biostrings
SystemRequirements: C++17
VignetteBuilder: knitr
RoxygenNote: 7.3.2
ByteCompile: true
URL: https://github.com/SimoneTiberi/BANDITS
BugReports: https://github.com/SimoneTiberi/BANDITS/issues
Config/pak/sysreqs: libicu-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:51:31 UTC
RemoteUrl: https://github.com/bioc/BANDITS
RemoteRef: HEAD
RemoteSha: ed38e4af52dfeac3e10f7b48452fe29b5dba7f49
NeedsCompilation: yes
Packaged: 2025-11-02 14:41:01 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2025-11-02 14:43:08 UTC; windows
Archs: x64
